PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62023331-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 214aa MW: 23670.1 Da PI: 9.9406 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.8 | 2.5e-22 | 3 | 50 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ri+n s rqvtfskRr g++KKA+E+++LC++e+ +i+fs+ +k++ + AUR62023331-RA 3 RIKNPSHRQVTFSKRRLGLFKKASEICTLCGVEAIIIVFSPGQKIFSF 50 8******************************************99877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence |
MARIKNPSHR QVTFSKRRLG LFKKASEICT LCGVEAIIIV FSPGQKIFSF GYPNVDSIVD 60 HYLSRNPTSR QTSSNGTKSE GVGGQQSSTM RELNLQLTKI LDLLETEKSR GDVFNTLKRK 120 PNQCWWEAPI DKLGLHELKI LSASMEDLKK NIANQSNFLE KTLSSSSALG MNKGNGAGVS 180 DQQHFDLKSI EAKIEGFALP DHLIGTFHAP KFF* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 5e-47 | M-type_MADS family protein |