PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62023311-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family LBD
Protein Properties Length: 285aa    MW: 30135.9 Da    PI: 6.701
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62023311-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.67e-324107199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++q+ql+q+
  AUR62023311-RA   4 SCNGCRVLRKGCSEDCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRMVNPIYGSVGLLWSGQWQLCQA 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelallke 99 
                     + e++l ++
  AUR62023311-RA  99 AIEAVLKGA 107
                     *99988765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    
MRMSCNGCRV LRKGCSEDCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPDH  60
LRPAIFRSLL YEACGRMVNP IYGSVGLLWS GQWQLCQAAI EAVLKGAPIT PIPTEAASNS  120
PPIQGAYDIR HVSKDEHAHS NNSSAAAGLH RVKPTRTRFK RVGSKSKPAS KAESAAATAL  180
QVLAAAESTR PDSSELNGSS TSHDSTVSHP DEPGSTTHTS LVSTDVTVDA AEVVVERENG  240
DDGEVELELT LGFGCDSGVK AESMSRKVNN NDDQVVCGMG LGLV*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-81LBD family protein