PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62023264-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C3H
Protein Properties Length: 264aa    MW: 29670.1 Da    PI: 7.465
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62023264-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH51.81.3e-16198223126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     yktelC+ +++tGtC+yG++C+FaHg
  AUR62023264-RA 198 YKTELCNKWQETGTCPYGPQCQFAHG 223
                     9************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MDYKNSNVNN DDYYGSDDII SNNIKNYCLF SSTSTSPPST PSATAADGST AAGASLYRAR  60
LILENHLYDE LLSRYRLAIT RLKELSREAT TLQEENEWLK LTNDDLTRRL NRALSISGQP  120
TNSPTSTVID DLDEEDERFT LPKSISVRSP GYFKLANSNS PSPVNQSQYP SQHANGTILR  180
VKKEEKAVEM DVFNQGMYKT ELCNKWQETG TCPYGPQCQF AHGVAELRLV IRHPRYKTQV  240
CRMVLSGVSC PYGHRCHFRH SLS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-56C3H family protein