PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62023162-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 257aa MW: 29837.2 Da PI: 8.6114 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.2 | 1.9e-27 | 9 | 55 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 krienk+ rqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+ AUR62023162-RA 9 KRIENKISRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLF 55 79*******************************************97 PP | |||||||
2 | K-box | 88.5 | 1.3e-29 | 101 | 184 | 16 | 99 |
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ e+ kL +++e Lqr+ Rh++Ged + Lsl+eLq+LeqqL+ +lk+iRskKn+l++e+i++l kkek++qe+n++L+k ++ AUR62023162-RA 101 TWAMEYPKLVARLEVLQRNMRHYVGEDTDALSLRELQHLEQQLDIALKRIRSKKNQLMHESISQLHKKEKAMQEQNNQLSKLMK 184 6899***************************************************************************98766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence |
MGRGKVELKR IENKISRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFDSMER 60 ILERYERYCY AERQLLATDS ESQQEVIVKQ SYYIHYVVSG TWAMEYPKLV ARLEVLQRNM 120 RHYVGEDTDA LSLRELQHLE QQLDIALKRI RSKKNQLMHE SISQLHKKEK AMQEQNNQLS 180 KLMKENDKRV EEPQKDDQNP SQLFLLPTSK PFPFPALTIG GAYQEMRELE EQADPEAEVP 240 ARTNTNIPAW MFSHVG* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 1e-80 | MIKC_MADS family protein |