PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62023057-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C3H
Protein Properties Length: 292aa    MW: 32757.3 Da    PI: 7.6663
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62023057-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.72.2e-093454526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                    +C f++r G C yG+rC++ H+
  AUR62023057-RA 34 ICTFYQR-GACAYGSRCRYDHV 54
                    7**9999.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
MSNRLICKFF KHGACLKGEH CEYAHDWNAP ANNICTFYQR GACAYGSRCR YDHVKVSQLQ  60
SSASSSSTAY SGTEIPEITS GMAPVSPVSI IQPELPPSSR QFFPPNKAAW SQQSDISDTV  120
EDDLIPQPRS DRLADQVICS FAAAGNCPKG EKCPHIHGEL CPTCGKHCLH PYRPKEREEH  180
FQTCEKMQKH LEALKRSQEI ECSVCLERVL AKTAASERKF GLLSECDHPF CITCIRFWRN  240
SSPTSGMDVN STLRACPICR KLSYFVIPSV LWYFSKEEKD EIVDSYMAKL K*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.11e-111C3H family protein