PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62022917-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

LBD

Protein Properties

Length: 350aa MW: 38042.3 Da PI: 7.4369

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62022917-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.1	8.3e-40	178	277	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+l+r+C+++C++ap+f a++pkkfa vhk+FGasnv+k+l+++pee+red+++sl yeAear+rdPvyG++g i lq+++ ql+++la AUR62022917-RA 178 SCAACKLLKRRCSPSCIFAPHFRADEPKKFAKVHKVFGASNVSKILNEVPEEHREDTVNSLSYEAEARLRDPVYGCIGAIALLQRRMIQLQHDLA 272 6********************************************************************************************** PP DUF260 96 llkee 100 l++++ AUR62022917-RA 273 LARAR 277 99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MEEVKKVGFT EPTAIQAQGW PMALKGRDLI GLAETGSGKT LAYLLPAIVH VNAQPILCKG 60 GSKAQEGGIC TCFSSSSQLE HVTPYDEDVL QEENNVKQQA NEGVVDQMLQ SKYVRPCKGN 120 GFLRLFCFTK GFYAAEQGVL SLYVVGRISG CSVDIGHGKI EPKPTMKKGY TEPRSSSSCA 180 ACKLLKRRCS PSCIFAPHFR ADEPKKFAKV HKVFGASNVS KILNEVPEEH REDTVNSLSY 240 EAEARLRDPV YGCIGAIALL QRRMIQLQHD LALARARLAQ YKASSLHSNV TASSNTDDNG 300 LFGLGDHNVS IIHMNLCSEG LISLDQFSQS DNGAYNSNDF GQVPDLLPL*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MEEVKKVGFT EPTAIQAQGW PMALKGRDLI GLAETGSGKT LAYLLPAIVH VNAQPILCKG  60
GSKAQEGGIC TCFSSSSQLE HVTPYDEDVL QEENNVKQQA NEGVVDQMLQ SKYVRPCKGN  120
GFLRLFCFTK GFYAAEQGVL SLYVVGRISG CSVDIGHGKI EPKPTMKKGY TEPRSSSSCA  180
ACKLLKRRCS PSCIFAPHFR ADEPKKFAKV HKVFGASNVS KILNEVPEEH REDTVNSLSY  240
EAEARLRDPV YGCIGAIALL QRRMIQLQHD LALARARLAQ YKASSLHSNV TASSNTDDNG  300
LFGLGDHNVS IIHMNLCSEG LISLDQFSQS DNGAYNSNDF GQVPDLLPL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	5e-58	LBD family protein