PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62022377-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 74aa MW: 8228.91 Da PI: 10.6653 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.9 | 9.8e-27 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 kri n rqvtf+kRr+g+lKKA+ELSvLCda++ vi+fs++gklye + AUR62022377-RA 9 KRIVNPVHRQVTFCKRRAGLLKKAKELSVLCDADIGVIVFSPQGKLYELA 58 7999*******************************************965 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 74 aa Download sequence |
MARGKVQLKR IVNPVHRQVT FCKRRAGLLK KAKELSVLCD ADIGVIVFSP QGKLYELATK 60 GYVPIHFTCN IFI* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 1e-36 | MIKC_MADS family protein |