PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62021664-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 359aa MW: 40682.2 Da PI: 6.3152 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.7 | 1.1e-21 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRr+gi+KKA EL +LCd+++ +++fs+t k AUR62021664-RA 9 KRLESSSNRQVTYSKRRTGIIKKARELAILCDIDIVLLMFSPTEK 53 689***************************************976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence |
MGRVKLKIKR LESSSNRQVT YSKRRTGIIK KARELAILCD IDIVLLMFSP TEKPTLFLGE 60 RSNLEEVITK FAQLTPQERA KRKLESLEAL KKTFKKCDHD VNIEDFVASS GQTAEELANQ 120 VGLLQAQITE AHKRLSCWSN PDKIDNVEHL RQMENSLKES INQIRLHKEN IGKHQFMSLD 180 CSNQFQNGMH IPLMMGSMQE CQPLSWLSSN DNQHLLLSED PNFLSHRDMK CTSDASLPGY 240 SGYYGDAKLE MENARQCENA RQDCGSLNEL TANACMGVQI GEQYPYSPYG NINLPEEKKV 300 MPDNGINFQG NPMDYQIPGQ FDMPRSIYDT RPQPWAPAAL QCPIPMFNEN SYPQVGSQ* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 1e-109 | M-type_MADS family protein |