PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62021552-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

Protein Properties

Length: 363aa MW: 42364.1 Da PI: 8.215

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62021552-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.1	3.8e-19	27	119	1	100
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffkv+ + ++++ +p kf+ e+ ++k s tl +s +W+++l+ + + v+t+GWk+Fv++ng++++Df+vF+++g+s+f v+ AUR62021552-RA 27 FFKVM---YGDFEHQMNIPQKFM-ECFKEK-LSPWYTLIAPSKHKWKIRLSSTYDERPLVFTDGWKQFVRDNGVETNDFLVFRFVGDSSF--EVS 114 77777...7777889******.554444.55699**********87777666*****************************9..999 PP EE-SS CS B3 96 vfrks 100 vf+ks AUR62021552-RA 115 VFDKS 119 99985 PP
2	B3	54.3	2.4e-17	243	330	1	87
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+ +++p +v + +l++pk a++h++k+ +++l++ d++ sW+v +++ +++s ++ l++ W Fv +n+L+e D++vF+l+++ AUR62021552-RA 243 FQITMLPTHVYRGFNLTIPKVWANKHMIKESHEVELRVPDSTKGSWRVGCRWtKGGSIQCQLRSKWPVFVLENNLEEHDTCVFELIQK 330 788999******************99999****************96666667***********************9863 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MGKKCEGCKI AENYNYWSEL PATKHQFFKV MYGDFEHQMN IPQKFMECFK EKLSPWYTLI 60 APSKHKWKIR LSSTYDERPL VFTDGWKQFV RDNGVETNDF LVFRFVGDSS FEVSVFDKSG 120 CEKEGCHFSI NSNSISRRFS CTSNLHINHG SVAKEEIEIC DSSSEDYSLW KEDEEETEDV 180 SHVITEEKRE RRGGSSEGKF PQSQKYFISN RRDLKPGEKK RASKMAECYR RSMKDNKRVF 240 PVFQITMLPT HVYRGFNLTI PKVWANKHMI KESHEVELRV PDSTKGSWRV GCRWTKGGSI 300 QCQLRSKWPV FVLENNLEEH DTCVFELIQK GISDDVRTPI FNVHIFRTVD HIVPLTVSTR 360 MV*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MGKKCEGCKI AENYNYWSEL PATKHQFFKV MYGDFEHQMN IPQKFMECFK EKLSPWYTLI  60
APSKHKWKIR LSSTYDERPL VFTDGWKQFV RDNGVETNDF LVFRFVGDSS FEVSVFDKSG  120
CEKEGCHFSI NSNSISRRFS CTSNLHINHG SVAKEEIEIC DSSSEDYSLW KEDEEETEDV  180
SHVITEEKRE RRGGSSEGKF PQSQKYFISN RRDLKPGEKK RASKMAECYR RSMKDNKRVF  240
PVFQITMLPT HVYRGFNLTI PKVWANKHMI KESHEVELRV PDSTKGSWRV GCRWTKGGSI  300
QCQLRSKWPV FVLENNLEEH DTCVFELIQK GISDDVRTPI FNVHIFRTVD HIVPLTVSTR  360
MV*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	2e-22	B3 family protein