PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62021353-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C3H
Protein Properties Length: 360aa    MW: 39245.8 Da    PI: 6.7766
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62021353-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.38.3e-06145165526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+ f++ G Ck Gd C FaHg
  AUR62021353-RA 145 ACSEFRK-GGCKKGDGCEFAHG 165
                     7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    
MMIGETRHHH QIDVPPWQES YSPTAVHISS PASSPPLQSN SGGVGSNHLP NSPTYYDAVL  60
ASLRRYLLAD AVDKEVSPAA AATVDYSSEV DFLSGEYDDD FFMYDFKVRK CTRARAHDWT  120
ECPFAHPGEK ARRRDPRKFS YSGTACSEFR KGGCKKGDGC EFAHGVFECW LHPTRFRTQA  180
CKDGPGCKRR VCFFAHTPDQ LRTGPGLGSP RGSGLVSGSE DSTINTPSVG DLMASIRNLQ  240
LNKVKSIPSS WGSHPMHVNG SPVFGSPCGV GTPTAINRAG FFSLPTTPTR PRIGYWDNQD  300
IGEEDEQPVM ERVESGRELR ARMFEKLSKE NPLDGSGSPL STSAPGPGPD FGWVCDLIE*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-89C3H family protein