PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62021250-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C3H
Protein Properties Length: 405aa    MW: 44111.9 Da    PI: 7.1902
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62021250-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.7e-0782103426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + C+f+ + G C+yGd CkF H+
  AUR62021250-RA  82 RVCNFWVQ-GKCNYGDGCKFLHS 103
                     78******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    
MDFDSNGGNK RVFHRLGNKQ SQPHHQHQQS HYPQNQKRAH GGLGGGGQRN DGFSSRKNPN  60
FNNTWGRPGG TSGGVPPKKM ERVCNFWVQG KCNYGDGCKF LHSWSIGGSF SLLTTLEGHQ  120
KVVTGITLPS GDKLYTGSKD EHVRIWDCAS GQCVSAVHLG GEIGCMINEG PWVFIGLPNM  180
VKALNIETVT DMSLSGPVGQ VYSLVVGNDM LFAGIQDGNI LAWKFNPATN CFEPAASLTG  240
HTSAVVTMFA GANRLYSGSM DNSIRVWNLE TLQCIQILTE HTSVVMSVLC WEQFLLSASL  300
DNTIKVWAAT PSGNLEVTYT HTEEHGILTL CGMFDAEAKP VLLCSTNDNF VHIYDLPSFM  360
ERGKIISKQE IRAIQAGPSG LFFTGDGNGQ VRVWNWLAEP KTAM*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein