PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62021239-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family LBD
Protein Properties Length: 161aa    MW: 18178.6 Da    PI: 6.4949
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62021239-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.65.6e-4061051100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lr++C++dC++ pyfp+++pk+f+nvhk++Gasn+ ++l+++p + reda+++l yeA++r++dPvyG+v+vi +lqq+l+ ++++l+
  AUR62021239-RA   6 RCAACKYLRKRCPSDCIFLPYFPSNDPKRFENVHKIYGASNIARMLQRIPVHLREDAANCLHYEARCRVEDPVYGCVKVIYQLQQELNMAQNQLV 100
                     6********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  AUR62021239-RA 101 KAQSE 105
                     *9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    
MANHSRCAAC KYLRKRCPSD CIFLPYFPSN DPKRFENVHK IYGASNIARM LQRIPVHLRE  60
DAANCLHYEA RCRVEDPVYG CVKVIYQLQQ ELNMAQNQLV KAQSEIALVL NVYGPPEDYI  120
SGPQTSEEDL SSSFENYYTQ PNIHGHLPLD PSSLGSLDAM *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.11e-45LBD family protein