PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62021220-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family HD-ZIP
Protein Properties Length: 768aa    MW: 84490.1 Da    PI: 5.7065
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62021220-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.2e-1971126156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r++ +++t++q++eLe++F+++ +p++++r e  ++lgL+ rqVk+WFqNrR+++k
  AUR62021220-RA  71 RKRYHRHTPQQIQELENFFKNCAHPDEKQRLEVGRRLGLESRQVKFWFQNRRTQMK 126
                     789999***********************************************999 PP
2START161.75.4e-512784983204
                     HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
           START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                     a +a++el+++a+ ++p+W+k      e +n++e+++kf++  +     + ++a+r++   + ++ +lve+++  + qW  t++    ka+t+ev
  AUR62021220-RA 278 AMAAMDELLAMAQTDSPLWFKGLddgkELLNQEEYVKKFSSFTGmkpcgFITDASRDTSSIFITSLELVEIMMIPR-QWRDTFPcmvsKAATVEV 371
                     5689*******************9999999*********775559*********************8887777777.****************** PP

                     ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
           START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172
                     +  g      g+lq m+ael+++sp vp R   ++Ry++q+ +g w++vdvSvd  ++p+ s s +R ++lpSg++++ ++ng+s vtw+eh+++
  AUR62021220-RA 372 LYHGaggtrdGELQMMNAELVFPSPFVPsRHEKILRYCKQHAEGMWAVVDVSVDMIRDPSYSGSAIRWRRLPSGCIVQNVANGYSLVTWIEHTEY 466
                     ***********************************************************99********************************** PP

                     -SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
           START 173 kgrlphwllrslvksglaegaktwvatlqrqc 204
                     +++++h+l+r+l++sgla+g ++w atlqr +
  AUR62021220-RA 467 DENSIHQLYRPLLRSGLAFGSQRWIATLQRER 498
                     *****************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    
MERLDEMGFY GDQYDPNNMI MVGENTINNS INKENSGSDN YESLSVGDVP ELDPEPELDE  60
GPSQVKPKGR RKRYHRHTPQ QIQELENFFK NCAHPDEKQR LEVGRRLGLE SRQVKFWFQN  120
RRTQMKTQIE RNENLVLKAE YDKLRVENIA MKDALRNPLC QACGGPTMLG DVSITNHHLR  180
VENARLKDDL ARVCAVAERF IGKPISDLVG PVGIPTSSSN LELSMGRGGL GGLMSSSSSL  240
PPMGLNLENG LSSNSTMTVS MNGSVSTEYE KSIFMQAAMA AMDELLAMAQ TDSPLWFKGL  300
DDGKELLNQE EYVKKFSSFT GMKPCGFITD ASRDTSSIFI TSLELVEIMM IPRQWRDTFP  360
CMVSKAATVE VLYHGAGGTR DGELQMMNAE LVFPSPFVPS RHEKILRYCK QHAEGMWAVV  420
DVSVDMIRDP SYSGSAIRWR RLPSGCIVQN VANGYSLVTW IEHTEYDENS IHQLYRPLLR  480
SGLAFGSQRW IATLQRERDC AAIFMSARIV PNDTTGVITQ EGRRSILKLM RRISNNFSSG  540
LCASSACRWE KLQVGGLGAD VCVMSRVSVD EPGEPSGVVL SASTSVWIPV PRQHIFEFLR  600
DEKLRGKWDI LANGGPMEVV ARLSKSHDVN NCVSLLCPPV SAAPARESNM LILQESWTDC  660
TSSFIVYAPV DSTSMETVLR GGDSDYLALL PSGFAVADAP IHPNVLTLAN DNGAGGSGSG  720
GASALTLGFQ ILVNSLPTAK LTVESINTVN DLMSCTIQKI KNSLGAN*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0HD-ZIP family protein