PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62021019-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 1847aa MW: 210108 Da PI: 7.1667

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62021019-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38	2.8e-12	21	46	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++++rtG+C+yG+rC+F+H+ AUR62021019-RA 21 PGEPDCNHYLRTGYCSYGGRCRFSHP 46 5789*********************9 PP
2	zf-CCCH	29.5	1.3e-09	55	80	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++r+G C +GdrC+F+H+ AUR62021019-RA 55 PGEPDCLYYLRNGSCGFGDRCRFNHP 80 5789*********************8 PP
3	zf-CCCH	35.2	2.1e-11	103	127	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+Ck+G +Ck++H++ AUR62021019-RA 103 QPICEYYMKTGICKHGTSCKYHHPK 127 799********************96 PP
4	zf-CCCH	27.7	4.6e-09	141	166	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C+++ +tG Ck+G +CkF+H+p AUR62021019-RA 141 GEQECKYYIATGKCKFGMSCKFHHPP 166 6789********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1847 aa Download sequence
MVEPKLKFVL EGEGQLYPER PGEPDCNHYL RTGYCSYGGR CRFSHPVGSV YPERPGEPDC 60 LYYLRNGSCG FGDRCRFNHP HLPSTSLGNK HVNGEDLPIR SDQPICEYYM KTGICKHGTS 120 CKYHHPKPFA PYKQGYPLRP GEQECKYYIA TGKCKFGMSC KFHHPPLSYE PVTMVKPVTP 180 HRHAPTRFRL SVVPSYVQRP YGSTSSDTSY LIDHLSTEDS SIFGPQSSSS GVQKEFFLPK 240 ENANFVAECS KGTLDTVFQP KMYRKLDILA LVLIAKIKIR AKVREARRIL HEPMLTCCLF 300 PHNHEIERET LIQLWMAGGF LEDARLKDVV FQHMGRHKGQ TTQMEDVGNC CIDLFEKRKL 360 ISASRTHNLT GKMTYVINVG TIKNMLNKVS TSTKDLYTMI KDSNSFDGSM QSWHVSLAYD 420 EFDQTTFKAL RKFHDLRTLL FIPNYGSSLK QIPSTFFLVI KLLRALDLSR SYITELPISI 480 GNLTKLRYLD CSLTPIEGLP ESIGHLRELQ TLKLKECNHL FELPKGMKDL VSLRHLDFDV 540 LGQLTSMPQG IGALTELRTL SAFIIDNNRG HNIRDLMYLN NLSGSICISG LENLCHEDDV 600 KVAALRRKKR ISKLQLRWNI FQDKKMEIQQ DSLTCIDEFI PNVCLEELQL LCYPLSRLPH 660 WIADEDLKNL VSITLIKCEN IELNTSLGEL PNLKYLEITQ MNGVRKIDCC FRGQISYPAF 720 WSLETLVIDG MSTLEAWEDV KTYDFPRLLK LIIKHCPNLA ELPFLPLIDS LKHLEISRCK 780 SLQYLTKQKL PGLIKDLIIN ECPLLKLKCS KDGEDWDKIE HVPNIWIDLK DIHSHQDDCS 840 EDDGRTTDSL SDDFDYSEDS DIADIVFREE PSKKGFMHHH PSAMEAAFQS GFASALLSIA 900 FEGMAHIILV ELKKIASADE AMIKLEATVT EAQEILSNLD ASMLDIHVNT KIVLQNLVDT 960 LARLCYKAGD LTEDLALKIM HKNIGSNKKP VLNVIRTSPT SWGKPYRFSN LQKEIDDILE 1020 QLKRLIKLLP EGRNKESNGN CSLNEVVPNL IGRECDKKEI IEELSSCSSN YKGLCIVGMD 1080 GLGKTALALT ILEQTEISEQ FDLIRLSMDT CGDFKFNRVV IQLENNLVAG SSHGSLLILF 1140 DNLLDVKSDD WDKFWSYITS KEIGGRQYTY IKILVTTVNA GVPEATKTKA HHLSFLSDEE 1200 CKKVLIERAQ FHIKPLPELE PSLIHAADGL AKQCEGLPYV ARILGVKLAH CDFDELVTMI 1260 NQPLWVSTVF KAEILPALRS GYLSLGPHLK QCFAYFSLFP QNYCYDVDEL VQLWVAEGFI 1320 EQDRSISIAL QNSNMYLNEL RNKSILQITH EATDNGKPVY KLHEFNHKFA HIAASWTCQR 1380 IDEGLSTLRS LDSDTRHLSV SCDNIDSMTI WAKLKKLKHL RTFLSLRNRK LIGAIPPELF 1440 KSLTRLRVLV LSKTDIVELP DSIKKLKRLR YLDVSYTSLK KLPETLVELP TLQYLKLKDT 1500 KSLSYLPSGF HKLTNLLSLD WERRDLMRVG VPSNIGSLSA LQTLPLFSVH DKEGYTVKEL 1560 NNMNNLRGSI CIQNLENIKD MEESKTAMLC NKSFLKSIEL KWMQSRSDSA AKDVLTGLKP 1620 HDYLTELKIT KYGSSKFPQW MCHSSLMVEK IHLKKCNVQV MPSFGELLNL KTLIIQDFAN 1680 LKCLDYHFCG IGVGHFQSLV SLELEDLAQL QQWTRLDAND MPRLRVLKIK LCPKLEDLPS 1740 LKYLTSLTDM QIEYCPILKS LPELPDTLKS LVVIECNLLK ERCQIGGSDW HKVDCIPEVE 1800 IDKEEIRTSV LPGIQLIMLT KYILELKQDN ANEGNEDGMV KLDGMK*

Sequence ? help Back to Top

Protein Sequence Length: 1847 aa Download sequence

MVEPKLKFVL EGEGQLYPER PGEPDCNHYL RTGYCSYGGR CRFSHPVGSV YPERPGEPDC  60
LYYLRNGSCG FGDRCRFNHP HLPSTSLGNK HVNGEDLPIR SDQPICEYYM KTGICKHGTS  120
CKYHHPKPFA PYKQGYPLRP GEQECKYYIA TGKCKFGMSC KFHHPPLSYE PVTMVKPVTP  180
HRHAPTRFRL SVVPSYVQRP YGSTSSDTSY LIDHLSTEDS SIFGPQSSSS GVQKEFFLPK  240
ENANFVAECS KGTLDTVFQP KMYRKLDILA LVLIAKIKIR AKVREARRIL HEPMLTCCLF  300
PHNHEIERET LIQLWMAGGF LEDARLKDVV FQHMGRHKGQ TTQMEDVGNC CIDLFEKRKL  360
ISASRTHNLT GKMTYVINVG TIKNMLNKVS TSTKDLYTMI KDSNSFDGSM QSWHVSLAYD  420
EFDQTTFKAL RKFHDLRTLL FIPNYGSSLK QIPSTFFLVI KLLRALDLSR SYITELPISI  480
GNLTKLRYLD CSLTPIEGLP ESIGHLRELQ TLKLKECNHL FELPKGMKDL VSLRHLDFDV  540
LGQLTSMPQG IGALTELRTL SAFIIDNNRG HNIRDLMYLN NLSGSICISG LENLCHEDDV  600
KVAALRRKKR ISKLQLRWNI FQDKKMEIQQ DSLTCIDEFI PNVCLEELQL LCYPLSRLPH  660
WIADEDLKNL VSITLIKCEN IELNTSLGEL PNLKYLEITQ MNGVRKIDCC FRGQISYPAF  720
WSLETLVIDG MSTLEAWEDV KTYDFPRLLK LIIKHCPNLA ELPFLPLIDS LKHLEISRCK  780
SLQYLTKQKL PGLIKDLIIN ECPLLKLKCS KDGEDWDKIE HVPNIWIDLK DIHSHQDDCS  840
EDDGRTTDSL SDDFDYSEDS DIADIVFREE PSKKGFMHHH PSAMEAAFQS GFASALLSIA  900
FEGMAHIILV ELKKIASADE AMIKLEATVT EAQEILSNLD ASMLDIHVNT KIVLQNLVDT  960
LARLCYKAGD LTEDLALKIM HKNIGSNKKP VLNVIRTSPT SWGKPYRFSN LQKEIDDILE  1020
QLKRLIKLLP EGRNKESNGN CSLNEVVPNL IGRECDKKEI IEELSSCSSN YKGLCIVGMD  1080
GLGKTALALT ILEQTEISEQ FDLIRLSMDT CGDFKFNRVV IQLENNLVAG SSHGSLLILF  1140
DNLLDVKSDD WDKFWSYITS KEIGGRQYTY IKILVTTVNA GVPEATKTKA HHLSFLSDEE  1200
CKKVLIERAQ FHIKPLPELE PSLIHAADGL AKQCEGLPYV ARILGVKLAH CDFDELVTMI  1260
NQPLWVSTVF KAEILPALRS GYLSLGPHLK QCFAYFSLFP QNYCYDVDEL VQLWVAEGFI  1320
EQDRSISIAL QNSNMYLNEL RNKSILQITH EATDNGKPVY KLHEFNHKFA HIAASWTCQR  1380
IDEGLSTLRS LDSDTRHLSV SCDNIDSMTI WAKLKKLKHL RTFLSLRNRK LIGAIPPELF  1440
KSLTRLRVLV LSKTDIVELP DSIKKLKRLR YLDVSYTSLK KLPETLVELP TLQYLKLKDT  1500
KSLSYLPSGF HKLTNLLSLD WERRDLMRVG VPSNIGSLSA LQTLPLFSVH DKEGYTVKEL  1560
NNMNNLRGSI CIQNLENIKD MEESKTAMLC NKSFLKSIEL KWMQSRSDSA AKDVLTGLKP  1620
HDYLTELKIT KYGSSKFPQW MCHSSLMVEK IHLKKCNVQV MPSFGELLNL KTLIIQDFAN  1680
LKCLDYHFCG IGVGHFQSLV SLELEDLAQL QQWTRLDAND MPRLRVLKIK LCPKLEDLPS  1740
LKYLTSLTDM QIEYCPILKS LPELPDTLKS LVVIECNLLK ERCQIGGSDW HKVDCIPEVE  1800
IDKEEIRTSV LPGIQLIMLT KYILELKQDN ANEGNEDGMV KLDGMK*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	3e-46	C3H family protein