PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62020904-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

bHLH

Protein Properties

Length: 427aa MW: 47630.1 Da PI: 5.1787

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62020904-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.1	1.8e-09	139	186	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka++L + ++Y++sLq AUR62020904-RA 139 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKATVLDEIINYVQSLQ 186 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MEKELNCSNL MEISGEQLSN CYFHPNWENS IDQNDPFESA LSSIVSSPTT AGVAQKNGPG 60 EGTMIRELIG RLGSICDSAG EVEVENEESN AKRSKLDEKD GKKENTEQNA GESNKEVTKP 120 EPPKDYIHVR ARRGQATDSH SLAERVRREK ISERMKFLQD LVPGCNKVTG KATVLDEIIN 180 YVQSLQRQVE FLSMKLATVN PRMEFNMEAL LSKDMFQSRG SSVPQTMYQI DQNSAAQAFP 240 YGYQSNQQMS LPLPNGVENP FSANPMNVSG IRRNPSIPMP SMEGFIDSMT QLPNLWEDDL 300 QSLVQMGIAQ NQTPADEVSI EVTLSRCHED TKSRFTKDEG SRAEGRLLNL VTAANCRRTV 360 DEQTARRTDE VTNTRSHEGG RTKAQGRLLN LVTAAKCELP ANGRRLPAKW RTDEGEGDWA 420 NRRERN*

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MEKELNCSNL MEISGEQLSN CYFHPNWENS IDQNDPFESA LSSIVSSPTT AGVAQKNGPG  60
EGTMIRELIG RLGSICDSAG EVEVENEESN AKRSKLDEKD GKKENTEQNA GESNKEVTKP  120
EPPKDYIHVR ARRGQATDSH SLAERVRREK ISERMKFLQD LVPGCNKVTG KATVLDEIIN  180
YVQSLQRQVE FLSMKLATVN PRMEFNMEAL LSKDMFQSRG SSVPQTMYQI DQNSAAQAFP  240
YGYQSNQQMS LPLPNGVENP FSANPMNVSG IRRNPSIPMP SMEGFIDSMT QLPNLWEDDL  300
QSLVQMGIAQ NQTPADEVSI EVTLSRCHED TKSRFTKDEG SRAEGRLLNL VTAANCRRTV  360
DEQTARRTDE VTNTRSHEGG RTKAQGRLLN LVTAAKCELP ANGRRLPAKW RTDEGEGDWA  420
NRRERN*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	5e-68	bHLH family protein