PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62020146-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 655aa MW: 71176.6 Da PI: 6.1216

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62020146-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.7	8.1e-08	280	300	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg AUR62020146-RA 280 PCPEFRK-GSCPKGDACEYAHG 300 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 655 aa Download sequence
MCSGSKSKVL TAKEVMESED YKKDSIEDEQ KSVLLLELSA TNDLTSFKDA VEKEGYDVDE 60 AGLWYGRRVG SKKMGFEERT PLMVAAMFGS KDILNYILQT GGVDVNRASG SDGATALHCA 120 AAGGSLYSHE VIKLLVESCA DVDRADINGN RPCDVIAPCF SFSSKLKRRT LDILLNKGDQ 180 GEDACGDQIE EGQQQLQLED LSPKSSSDGS GSERKEYPID PSLPDIKNGI YGTDEFRMYT 240 FKVKPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGSCP KGDACEYAHG 300 IFECWLHPAQ YRTRLCKDET NCARRVCFFA HKPEELRPLY ASTGSAVPSP RSYSSSGPSF 360 DMGSLSPLAL GSPPVMMPST STPPMTPTGA SSPIGGAGAW QNHLNITPPP ALQLPGSRLK 420 AALSARDMDM ESGLRRQQLL DELSGLSLSS PTSWNGKMGR LGGFSLSSPT GVQMRQNMNQ 480 QLLSSYSSGM PSSPVRGSSF GIEPSGSPVS NPRLAAFAKR SQSFVERNAV NRLSSPASNA 540 SVMPSHLSDW GSPDGKVDWG VQGDELSKLR KSASFAYRSN GSNTAGNPNP MRAAGDEPDV 600 SWVHSLVKDA PPGSSNQLGF EEQLRDQYHL NSGMSERFPP WVEQLYMEQE PMAA*

Sequence ? help Back to Top

Protein Sequence Length: 655 aa Download sequence

MCSGSKSKVL TAKEVMESED YKKDSIEDEQ KSVLLLELSA TNDLTSFKDA VEKEGYDVDE  60
AGLWYGRRVG SKKMGFEERT PLMVAAMFGS KDILNYILQT GGVDVNRASG SDGATALHCA  120
AAGGSLYSHE VIKLLVESCA DVDRADINGN RPCDVIAPCF SFSSKLKRRT LDILLNKGDQ  180
GEDACGDQIE EGQQQLQLED LSPKSSSDGS GSERKEYPID PSLPDIKNGI YGTDEFRMYT  240
FKVKPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGSCP KGDACEYAHG  300
IFECWLHPAQ YRTRLCKDET NCARRVCFFA HKPEELRPLY ASTGSAVPSP RSYSSSGPSF  360
DMGSLSPLAL GSPPVMMPST STPPMTPTGA SSPIGGAGAW QNHLNITPPP ALQLPGSRLK  420
AALSARDMDM ESGLRRQQLL DELSGLSLSS PTSWNGKMGR LGGFSLSSPT GVQMRQNMNQ  480
QLLSSYSSGM PSSPVRGSSF GIEPSGSPVS NPRLAAFAKR SQSFVERNAV NRLSSPASNA  540
SVMPSHLSDW GSPDGKVDWG VQGDELSKLR KSASFAYRSN GSNTAGNPNP MRAAGDEPDV  600
SWVHSLVKDA PPGSSNQLGF EEQLRDQYHL NSGMSERFPP WVEQLYMEQE PMAA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	0.0	C3H family protein