PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62019992-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

HD-ZIP

Protein Properties

Length: 370aa MW: 40657.2 Da PI: 9.1202

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62019992-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59	8e-19	194	248	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q +Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k AUR62019992-RA 194 RKKLRLTKDQSAILEESFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTK 248 78889************************************************98 PP
2	HD-ZIP_I/II	127.9	4.4e-41	194	283	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+k+q+++LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l AUR62019992-RA 194 RKKLRLTKDQSAILEESFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCEQLTEENRRLQKEVQELR-AL 283 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MMVAGKEDLG LSLCLGSSNP NNNNNNNTTT STSGNTHNHT SNIGFFMNNN SNNRNFNHHH 60 QPQPQPQTTS SNASPLQLNL MMMPSLASST ASPSPLLQKL PWNRSTDSFP PSSDRNSDSS 120 RSFLRGIDVN RPAGGDEEDA GVSSPNSTVS TVSGKRSSGE RDSMTTAGAG DDIEVERASS 180 RGLSDDEDGG ENSRKKLRLT KDQSAILEES FKEHNTLNPK QKLALAKRLG LRPRQVEVWF 240 QNRRARTKLK QTEVDCEFLK RCCEQLTEEN RRLQKEVQEL RALKLSPQFY MQMTPPTTLT 300 MCPSCERVAV PPSATSASPA TQLQQQPSAT TIPDSRPNHT AHHRPMPVNP WAVAAPVPIR 360 SFEALRTRS*

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MMVAGKEDLG LSLCLGSSNP NNNNNNNTTT STSGNTHNHT SNIGFFMNNN SNNRNFNHHH  60
QPQPQPQTTS SNASPLQLNL MMMPSLASST ASPSPLLQKL PWNRSTDSFP PSSDRNSDSS  120
RSFLRGIDVN RPAGGDEEDA GVSSPNSTVS TVSGKRSSGE RDSMTTAGAG DDIEVERASS  180
RGLSDDEDGG ENSRKKLRLT KDQSAILEES FKEHNTLNPK QKLALAKRLG LRPRQVEVWF  240
QNRRARTKLK QTEVDCEFLK RCCEQLTEEN RRLQKEVQEL RALKLSPQFY MQMTPPTTLT  300
MCPSCERVAV PPSATSASPA TQLQQQPSAT TIPDSRPNHT AHHRPMPVNP WAVAAPVPIR  360
SFEALRTRS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	193	199	SRKKLRL
2	243	251	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	9e-85	HD-ZIP family protein