PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62019397-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 175aa MW: 20468.4 Da PI: 8.974 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.2 | 7.7e-27 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien +nrqvt+skRr+g++KK +EL +LCda++ +iifs tgkl++++ AUR62019397-RA 9 KRIENRTNRQVTYSKRRQGLMKKTKELAILCDAQIGLIIFSGTGKLHTFP 58 79***********************************************8 PP | |||||||
2 | K-box | 45.6 | 3.1e-16 | 82 | 162 | 11 | 94 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 + + e+l+ el+ L++ i+n ++++R++l edL++L l+ Lq+ e+qLe+sl+ iR n+l+ +q+e+l++ke+ lq en ++ AUR62019397-RA 82 HDNREELYSELQALREAIHNAEQNIRNYLVEDLGPLPLEVLQKHEHQLESSLNIIR---NQLMQQQMENLRRKEQLLQTENGNM 162 456899*************************************************9...69*******************9876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence |
MGRGKIEMKR IENRTNRQVT YSKRRQGLMK KTKELAILCD AQIGLIIFSG TGKLHTFPES 60 SNSLEQTIQR YLNVQGIQLP VHDNREELYS ELQALREAIH NAEQNIRNYL VEDLGPLPLE 120 VLQKHEHQLE SSLNIIRNQL MQQQMENLRR KEQLLQTENG NMYHWSELFP KQGY* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 4e-54 | MIKC_MADS family protein |