PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62019268-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

AP2

Protein Properties

Length: 537aa MW: 57880 Da PI: 5.8193

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62019268-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.9	3.2e-15	241	292	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g AUR62019268-RA 241 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 292 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence
MSSMNSNNWL SFPLSPTHPS HLQSTNSQPH QQFSLGLVSD IDNPFGQAQE WNLLNSQGGN 60 EVPKIADFLG VGKSESHHDS PDLSAFSDMG QGSESDYLFS GNNGLLAVQN TVAAASNTSE 120 YDQYQDNSNN CLQSLTTAAT GAASTAATVT TAITPVVEAT PRRTLDTFGQ RTSIYRGGYD 180 KEEKAARSYD LAAIKYWGTS TTTNFPISNY EKEVEDMKHM TRQEFVAAIR RKSSGFSRGA 240 SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFD 300 MSRYDVKAIL ESNTLPIGGG AAKRLKEAQA IESSRKREEM LALSNSTYPY GASSSTSSRY 360 GAHQQATHAY PLLPYHQQDT QPQPLLTLQN NHGQESNNIS LSHYSQEAQF LQLYQQSSYS 420 NPSSMYNNYL QTNPSLLHGF MNMSSNSGVI DTNNNGSSSG SYSGGAYLGG GAGINGMGSA 480 SSTSNPVGPG DTHEPLALVK VDYDMPSDGG GGGSYAGWST ETVQGSNNGV FAMWNE*

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence

MSSMNSNNWL SFPLSPTHPS HLQSTNSQPH QQFSLGLVSD IDNPFGQAQE WNLLNSQGGN  60
EVPKIADFLG VGKSESHHDS PDLSAFSDMG QGSESDYLFS GNNGLLAVQN TVAAASNTSE  120
YDQYQDNSNN CLQSLTTAAT GAASTAATVT TAITPVVEAT PRRTLDTFGQ RTSIYRGGYD  180
KEEKAARSYD LAAIKYWGTS TTTNFPISNY EKEVEDMKHM TRQEFVAAIR RKSSGFSRGA  240
SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFD  300
MSRYDVKAIL ESNTLPIGGG AAKRLKEAQA IESSRKREEM LALSNSTYPY GASSSTSSRY  360
GAHQQATHAY PLLPYHQQDT QPQPLLTLQN NHGQESNNIS LSHYSQEAQF LQLYQQSSYS  420
NPSSMYNNYL QTNPSLLHGF MNMSSNSGVI DTNNNGSSSG SYSGGAYLGG GAGINGMGSA  480
SSTSNPVGPG DTHEPLALVK VDYDMPSDGG GGGSYAGWST ETVQGSNNGV FAMWNE*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	1e-147	AP2 family protein