PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62019220-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C3H
Protein Properties Length: 299aa    MW: 31522.7 Da    PI: 9.8292
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62019220-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.51e-07101126227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt++C  f     CkyGd+C+FaHg+
  AUR62019220-RA 101 KTKICTKFNSPEGCKYGDKCHFAHGE 126
                     8999999999999***********96 PP

2zf-CCCH34.82.8e-11265289126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC +f + G C +GdrC+FaHg
  AUR62019220-RA 265 FKTRLCENFTK-GSCTFGDRCHFAHG 289
                     79*********.*************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MDFGGPRKRG RHEGSLNGNG GFKKSRPDFG VESWGELVKV LGFKLFVTSG CPFGEGCHFL  60
HHVPGGFKAV SQMLNLGGAP VPPPRNVAPS YSDGPATPSG KTKICTKFNS PEGCKYGDKC  120
HFAHGERQLG RPSIPSYEDP RGMGYMSGRM GGRMEPPPPG IGAAANFGES STAKLSIDAA  180
LAGAVIGKSG INSKQICRVT GVKLSIRDHE TDSNKRNIQL EGTFDQIKQA SSMVEELIRN  240
VKAASGGPPV RQSTGHGAPG GGSNFKTRLC ENFTKGSCTF GDRCHFAHGA DEMRKSAI*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.17e-57C3H family protein