PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62018547-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

HSF

Protein Properties

Length: 487aa MW: 53776.7 Da PI: 5.7186

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62018547-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.4	3.1e-35	19	110	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+y++++d++++e++sws++++sf+v+++ efa+ +Lp+yFkhsnf+SF+RQLn+YgF+k++ e+ weF+++ F k+kk+ll++ AUR62018547-RA 19 FLLKTYDMVDDPSTNEIVSWSDSNTSFIVWNPPEFARLLLPTYFKHSNFSSFIRQLNTYGFRKIDPEK---------WEFANDDFIKDKKHLLKN 104 9**************************************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+k AUR62018547-RA 105 IHRRKP 110 *985 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
METSTSGNGG GGSGGPAPFL LKTYDMVDDP STNEIVSWSD SNTSFIVWNP PEFARLLLPT 60 YFKHSNFSSF IRQLNTYGFR KIDPEKWEFA NDDFIKDKKH LLKNIHRRKP VHSHSHPPPD 120 PERVAFEEEM EKLSREKNEL DAKVSGFNMH HCAAKSQLED VTLRLCDMEK RQEKLITYLQ 180 KAVQNPAFVE HLSQKIDAMD LMAYNKKRRL PRSDHFLPAG ENNFGDNQSF CRPEVASIYQ 240 QDLSNKLKLE LSTAVSKMNL VSNSTHCSNE DWASPTSRSS GTDPKDAELG ICTLPFATET 300 FDLSDAGTCL EFKMDASLSD KVGVKECSGL PSMQQNMVSA EECDVICCQL NLSLASSPVQ 360 LNQNAYSSRA THMDVDASGS QGTKLDASGS NRDGLGVASK SNHPIGNVAN SSSSQETRSH 420 NQDPTPAAPA RVNDHFWEQF LTERPGASDT EEASSCYRAL PGDEQEDRGS SHGISRNAKN 480 LGKLTL*

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

METSTSGNGG GGSGGPAPFL LKTYDMVDDP STNEIVSWSD SNTSFIVWNP PEFARLLLPT  60
YFKHSNFSSF IRQLNTYGFR KIDPEKWEFA NDDFIKDKKH LLKNIHRRKP VHSHSHPPPD  120
PERVAFEEEM EKLSREKNEL DAKVSGFNMH HCAAKSQLED VTLRLCDMEK RQEKLITYLQ  180
KAVQNPAFVE HLSQKIDAMD LMAYNKKRRL PRSDHFLPAG ENNFGDNQSF CRPEVASIYQ  240
QDLSNKLKLE LSTAVSKMNL VSNSTHCSNE DWASPTSRSS GTDPKDAELG ICTLPFATET  300
FDLSDAGTCL EFKMDASLSD KVGVKECSGL PSMQQNMVSA EECDVICCQL NLSLASSPVQ  360
LNQNAYSSRA THMDVDASGS QGTKLDASGS NRDGLGVASK SNHPIGNVAN SSSSQETRSH  420
NQDPTPAAPA RVNDHFWEQF LTERPGASDT EEASSCYRAL PGDEQEDRGS SHGISRNAKN  480
LGKLTL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-140	HSF family protein