PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62017982-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

AP2

Protein Properties

Length: 406aa MW: 44186 Da PI: 8.8394

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62017982-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	33.1	1.4e-10	112	168	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + rk + g ++ +e+Aa+ ++ a++k++g AUR62017982-RA 112 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEEKAARSYDLAALKYWG 168 57*****************4444.2344336655.779999************98 PP
2	AP2	50.2	6.2e-16	211	262	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g AUR62017982-RA 211 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 262 57**************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MAPAAAASNS NWLSFSLSPM EMLASSHQTH NPQIPINSPS PHHYFLDPFY TTGGYQGAFS 60 GNSGSEVDDS AATHLGAEFL VPQNTEKSIV AVAADSDNSI KKISDTFGQR TSIYRGVTRH 120 RWTGRYEAHL WDNSCRREGQ ARKGRQGGYD KEEKAARSYD LAALKYWGPT ATTNFPISNY 180 STELEDMKHV TKQEFIASLR RKSSGFSRGA SIYRGVTRHH QQGRWQARIG RVAGNKDLYL 240 GTFATEEEAA EAYDIAAIKF RGVNAVTNFE MNRYDVEAIL KSNLPIGGAA KRLKLATEAA 300 DQKPTLSLNQ QSRSSNGSSG GTSSTINFAA IQSVPPISCA VPYDAATAIF HQNLFHHLNS 360 NGGSHQAVAS PEAYGSGMGI SSVAPMMSLM PQTPAEFYIW PHQSY*

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MAPAAAASNS NWLSFSLSPM EMLASSHQTH NPQIPINSPS PHHYFLDPFY TTGGYQGAFS  60
GNSGSEVDDS AATHLGAEFL VPQNTEKSIV AVAADSDNSI KKISDTFGQR TSIYRGVTRH  120
RWTGRYEAHL WDNSCRREGQ ARKGRQGGYD KEEKAARSYD LAALKYWGPT ATTNFPISNY  180
STELEDMKHV TKQEFIASLR RKSSGFSRGA SIYRGVTRHH QQGRWQARIG RVAGNKDLYL  240
GTFATEEEAA EAYDIAAIKF RGVNAVTNFE MNRYDVEAIL KSNLPIGGAA KRLKLATEAA  300
DQKPTLSLNQ QSRSSNGSSG GTSSTINFAA IQSVPPISCA VPYDAATAIF HQNLFHHLNS  360
NGGSHQAVAS PEAYGSGMGI SSVAPMMSLM PQTPAEFYIW PHQSY*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10510.2	1e-135	AP2 family protein