PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62017780-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 690aa MW: 76324 Da PI: 7.0839

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62017780-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.8	6.2e-06	117	139	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff+r G+C drC+++Hgp AUR62017780-RA 117 VPCIFFQR-GQCLKADRCPYMHGP 139 79****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence
MATTVTKEAL QLQQGPPSSS AAEDESLKRN TDCVYYLASP LTCKKGAECE YRHSEYARMN 60 PTDCWYWMNG NCLNPKCSFR HPPLDGLVGN QVDGPSALVP PGPPMHSAPQ NPAKQGVPCI 120 FFQRGQCLKA DRCPYMHGPS PPNTKIQQAP SSTPTPGAHA FKKAFSSLEK CTQPQMNFQA 180 NKPKVVETPH QANAFPKNQS IRPTNGATVG KGYLPPSGVT AVGTSKYGEI KPPVDNGNSR 240 SRTGRAHHGR SYDDHYFQNG RDADDSLRES SPGFDVLVDN KVNEDEFYHN EDQYAKMRGR 300 DGRNLNEFDI GRQDDYGSVA DVEPEIYHNR RGYDSFDRMP EKYARDHRRV SSERSLGEPA 360 HMDRRGPPYK SESLDVNQNS DLRHRLSKHR RVNGLKSVVN SDYSHDDRAE DRGYRSTRRD 420 SRRSPIHESS RGHRLQGRIK LPRKSSPQVS GQPSRLRDRL SGIKQDESRE GRMIKGPVMR 480 KDTVPSVDVN FAGPKSLSEL KGTKHTDSKS QQLKNQEPVS GGKLRDTVLA SSIGTEGNIA 540 FAGPKPLSEI LKRKRTASTG GTSSDDKEEI KDNENDVNLT SSPSNSAADT RKQVASHSAD 600 EQAKASKVEN KILEVEADEE EGEISNKKIK SNGDSESPSL DDNKQPEAEE ALVVADGYHL 660 NDGETGDLEE EFMDEDDGDD FAKKLGVSF*

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence

MATTVTKEAL QLQQGPPSSS AAEDESLKRN TDCVYYLASP LTCKKGAECE YRHSEYARMN  60
PTDCWYWMNG NCLNPKCSFR HPPLDGLVGN QVDGPSALVP PGPPMHSAPQ NPAKQGVPCI  120
FFQRGQCLKA DRCPYMHGPS PPNTKIQQAP SSTPTPGAHA FKKAFSSLEK CTQPQMNFQA  180
NKPKVVETPH QANAFPKNQS IRPTNGATVG KGYLPPSGVT AVGTSKYGEI KPPVDNGNSR  240
SRTGRAHHGR SYDDHYFQNG RDADDSLRES SPGFDVLVDN KVNEDEFYHN EDQYAKMRGR  300
DGRNLNEFDI GRQDDYGSVA DVEPEIYHNR RGYDSFDRMP EKYARDHRRV SSERSLGEPA  360
HMDRRGPPYK SESLDVNQNS DLRHRLSKHR RVNGLKSVVN SDYSHDDRAE DRGYRSTRRD  420
SRRSPIHESS RGHRLQGRIK LPRKSSPQVS GQPSRLRDRL SGIKQDESRE GRMIKGPVMR  480
KDTVPSVDVN FAGPKSLSEL KGTKHTDSKS QQLKNQEPVS GGKLRDTVLA SSIGTEGNIA  540
FAGPKPLSEI LKRKRTASTG GTSSDDKEEI KDNENDVNLT SSPSNSAADT RKQVASHSAD  600
EQAKASKVEN KILEVEADEE EGEISNKKIK SNGDSESPSL DDNKQPEAEE ALVVADGYHL  660
NDGETGDLEE EFMDEDDGDD FAKKLGVSF*