PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62017628-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family ARF
Protein Properties Length: 856aa    MW: 94764.7 Da    PI: 6.1295
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62017628-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.75.1e-24128229199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  AUR62017628-RA 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldytQQPPAQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WNE 218
                     99*****************************96555555..8************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  AUR62017628-RA 219 KNQLLLGIRRA 229
                     9999****997 PP
2Auxin_resp120.61.2e-39254337183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaast+s F+v++nPras+seFvv+++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  AUR62017628-RA 254 AAHAASTNSRFTVFFNPRASPSEFVVPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 337
                     79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    
MRLSPSAFPH QPEEGEKKVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPS LPAQLICQLH DVTMHADVET DEVYAQMTLQ PLTLQEQKDV CLLPAELGTP  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYT QQPPAQELIA RDLHDNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVIFIWNEKN QLLLGIRRAN RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAST NSRFTVFFNP RASPSEFVVP LAKYVKAVYH TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL  360
TTFPMYPSPF PLRLKRPWPS GLPSFPVLKD GDMGLNSPLM WLQREVGDRC MSSLNFQGYG  420
LTPWMQPRLD PAMLGLQPDI FQTMASAALQ DPRGLEKRPN QSLLQFQPNQ NVSCQQSSLT  480
NHLLQQAQSQ QNLVPNFQEN QNVTHNQVIG NSKSPSFGSS TQALPTSLEA ISSACSQQMF  540
SNSIMNSVTA AGISPMHSLL NSFSHDGGSR QINLPNSNPL VSSTPLLSKR VVVEPPQLSS  600
STAPCSLPQV EELGGPQTRI SDLSSLLPPL PGREFSIYQG IGDTQNNMLF GVNAQQNELV  660
NLRSSNNEND SLSMPFACSS FPSAAGTDFS PASDMMTASC VDESGFLQSS ENDDQANPPS  720
GTFVKVQKSG SLGRSLDISK FSSYHELRSE LAHLFGLEGQ LEDPLRSGWQ LVFVDRENDV  780
LLLGDDPWQE FVNNVWYIKI LSPQEVQQMG KDGLEFPNSI RPKHQNSFNS CDDYTLQQDL  840
RHNSNGMASV TSLDY*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein