PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62017476-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 404aa MW: 46181.9 Da PI: 9.2218

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62017476-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.6	1e-23	27	115	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +f+ +Y+ ++GF+vrk+++++s ++g++t+r+fvCskeg+r+++k++ + + ++rae rtgCk ++ + + + + k++v+++++eHnH l AUR62017476-RA 27 NFWLQYGGKMGFNVRKHYENRS-KDGQVTSRRFVCSKEGFRQPDKRD-HLTTNSRAERRTGCKVRIGIILIRfTWKYQVHDFVSEHNHVLH 115 69****************99.7888**************99.999**************9999*************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MADSNDEVEN WVPRVGMEFD SVEDAWNFWL QYGGKMGFNV RKHYENRSKD GQVTSRRFVC 60 SKEGFRQPDK RDHLTTNSRA ERRTGCKVRI GIILIRFTWK YQVHDFVSEH NHVLHPPETS 120 HLLPSQRKIS EIQAIEIELA DDSGIRPRAA HEFIGAHVGG SSNLGYTHRD HKNYLRNVLR 180 AFKACMYDYK EEAEFEKAFE ALRGKVTKVP EKYILKRWTK EARSEVVEDV SGRAILEDPW 240 LDATRRYKSL CQKFVKVASR ASNFEESSSL LENGLNNLIS EVDKLFMSLA IEKGRASSDV 300 NSSEQLQACV SNSITLKPKE GKKGGKRRKS WIEKFHDAST QASRSKQTIH NKKKVPNHPN 360 SENIPPQGEC YGSEASSYDN IWKEVSFQTQ AMNVPNSSLE LNP*

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MADSNDEVEN WVPRVGMEFD SVEDAWNFWL QYGGKMGFNV RKHYENRSKD GQVTSRRFVC  60
SKEGFRQPDK RDHLTTNSRA ERRTGCKVRI GIILIRFTWK YQVHDFVSEH NHVLHPPETS  120
HLLPSQRKIS EIQAIEIELA DDSGIRPRAA HEFIGAHVGG SSNLGYTHRD HKNYLRNVLR  180
AFKACMYDYK EEAEFEKAFE ALRGKVTKVP EKYILKRWTK EARSEVVEDV SGRAILEDPW  240
LDATRRYKSL CQKFVKVASR ASNFEESSSL LENGLNNLIS EVDKLFMSLA IEKGRASSDV  300
NSSEQLQACV SNSITLKPKE GKKGGKRRKS WIEKFHDAST QASRSKQTIH NKKKVPNHPN  360
SENIPPQGEC YGSEASSYDN IWKEVSFQTQ AMNVPNSSLE LNP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	326	354	KRRKSWIEKFHDASTQASRSKQTIHNKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-23	FAR1 family protein