PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62017206-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

bHLH

Protein Properties

Length: 293aa MW: 32904.3 Da PI: 5.252

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62017206-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.5	5.5e-09	132	178	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+ + + f L +lP + kK +K ++L +A++++k+Lq AUR62017206-RA 132 DHIIAERKRRELLSQMFISLSAILPGL-----KKIDKTSVLGEAIRHMKELQ 178 699**********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence
MTSTMTMDAW LAELEIDMDP VDSLIDPYHQ SVMDMESTFD EQLAAAFFDT ASPQVDIECN 60 VIEQYISTPP ISDISENHDD NNNNNNNNES ENIVSSDVQE SQPSKTKQKT KKQAVSTSHA 120 PKRKRQPSQV QDHIIAERKR RELLSQMFIS LSAILPGLKK IDKTSVLGEA IRHMKELQEK 180 VKVLESEVAK RIVESVVLVN GTADDNVSSS STMDDYLKVL GKTVLLRVYC EKRKEILAKL 240 FAEVDKHHLV ITNFSVIPFE NVALTVTIVA QMEKGFNKNV RDFATTLRNA LH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	141	KRKRQPSQVQDHIIAERKRR
2	122	163	KRKRQPSQVQDHIIAERKRRELLSQMFISLSAILPGLKKIDK
3	123	142	KRKRQPSQVQDHIIAERKRR
4	137	142	ERKRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	9e-43	bHLH family protein