PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62017047-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 687aa MW: 75800.9 Da PI: 5.1373

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62017047-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.9	5.7e-06	230	249	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C +f + G+C G++C+F H AUR62017047-RA 230 ICEYFVK-GWCIKGSSCRFLH 249 6****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence
MAEQGSNLGK EDANLAEQDV KMAEIEGDDN DGEGEGEIND VATAIAAAKS NSPVYDDSQD 60 VETKGGEVCL RSGHTSEVKS EASILYDTYA AETCCDRNSS PKLQNADESG IPSIDVGRYK 120 SSKLYKHIAG PLSNGSDAVE EKQGHVEQSI LVSTSETHVS APHAVSDQLG NMETADVEES 180 KLLSEEADHH SQSRQDMNHK DSRSWFPRVR PRSLSSGAEC EDGSKRPAII CEYFVKGWCI 240 KGSSCRFLHK RDHENATQVE GGVLLTKSEL SPDKGSGDNI GKGIQEECGV GSRQYEDTDT 300 NALLERKVSS SLFSIDFKNF PSCKDGSRPI STSREVEVDN HGLSVAESSS IPWQNFCSRF 360 GSSMRELGVS SGLDSISRLV EESAAMRRRY SLDAQSSVPP YHFSSWKNTS LLRNSPLYSG 420 SNSAKYSDSS YTLDRLLSFK YKKAFTPYNW EPSVPFQSSY FKPPVNKSSD VPYDPFRDSI 480 EKSDIGRESV RLSSCGQTQD AKSISGQNSL ELPRRLEIES WDKNYSGHDK VIPAVEAESA 540 ATSNSDAQNK SLTEEENPMV PGSVKAILKA SRSVNDGNSK IQSGELKLEN GRQPIELDDE 600 ESKIIRCFRA ALIEFVKELM KPIWHEGRLS KDVYKVIVQK AEDKILSNLK PNQVPNSSEL 660 IKQYLSFSRP KILKLIQAYV DKYGRF*

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence

MAEQGSNLGK EDANLAEQDV KMAEIEGDDN DGEGEGEIND VATAIAAAKS NSPVYDDSQD  60
VETKGGEVCL RSGHTSEVKS EASILYDTYA AETCCDRNSS PKLQNADESG IPSIDVGRYK  120
SSKLYKHIAG PLSNGSDAVE EKQGHVEQSI LVSTSETHVS APHAVSDQLG NMETADVEES  180
KLLSEEADHH SQSRQDMNHK DSRSWFPRVR PRSLSSGAEC EDGSKRPAII CEYFVKGWCI  240
KGSSCRFLHK RDHENATQVE GGVLLTKSEL SPDKGSGDNI GKGIQEECGV GSRQYEDTDT  300
NALLERKVSS SLFSIDFKNF PSCKDGSRPI STSREVEVDN HGLSVAESSS IPWQNFCSRF  360
GSSMRELGVS SGLDSISRLV EESAAMRRRY SLDAQSSVPP YHFSSWKNTS LLRNSPLYSG  420
SNSAKYSDSS YTLDRLLSFK YKKAFTPYNW EPSVPFQSSY FKPPVNKSSD VPYDPFRDSI  480
EKSDIGRESV RLSSCGQTQD AKSISGQNSL ELPRRLEIES WDKNYSGHDK VIPAVEAESA  540
ATSNSDAQNK SLTEEENPMV PGSVKAILKA SRSVNDGNSK IQSGELKLEN GRQPIELDDE  600
ESKIIRCFRA ALIEFVKELM KPIWHEGRLS KDVYKVIVQK AEDKILSNLK PNQVPNSSEL  660
IKQYLSFSRP KILKLIQAYV DKYGRF*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	7e-30	C3H family protein