PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62016852-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 709aa MW: 78778.6 Da PI: 5.43

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62016852-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.4	9.4e-07	144	163	10	26
GGTS...--TTTTT-SS-SS CS zf-CCCH 10 artG...tCkyGdrCkFaHg 26 artG C+yGd+C+F+H+ AUR62016852-RA 144 ARTGdisSCNYGDKCRFSHD 163 78888889***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 709 aa Download sequence
MDDSLTEPPN SQTTQPLDLS PTSMDDSQTK PATTEVTHSA MDESEPEVTT TENTEPPSET 60 ETLNSNQPSP EELMAKGVAP VKKEFLRPPP TSRCVTSDDR DENGKSESKS KSSGVVVEKK 120 SKRQLKRERH EKLKSALNLC PAIARTGDIS SCNYGDKCRF SHDLEAYKTQ RPADLEGECP 180 FIYAQKPCPY GVTCRFYGTH KDVLNDNLDA LKEDSEVNML KKDVQKLLWK NKMKFPKSNV 240 ALKQLGVEGR GHTRVKDSEE EESIAPKVSN GSHCSEDKGC EKHDSANTQD PSAVLPEEPL 300 TDGILGVDDK RPLKKSKSGD DERDSSNDLN NGCSSVSGEG LVKDSTEDKP PSTNNCLPPE 360 TDASLKLLPR ERKLIDFRGK LYLAPLTTVG NLPFRRVCKD FGADVTCGEM AMCTNLLEVS 420 ADTVARAVEL IDQECSLDFI DINMGCPIDL VVNKGAGSAL LTKPLRMKNV IQAACASAER 480 PITVKVRTGY VEGRNRADSL ISQIYEWGAS AVTIHGRSRQ QRYSKAADWD YINTCVSKAP 540 GTFQVLGNGD VFSYTDWNKH FSDCPELSSC MIARGALVKP WLFTEIKEQR HWDISSGERL 600 DILRDYVRFG LEHWGSDSKG VETTRFFLLQ WLSYTFRYIP VGLLDVIPQK INWRPPSYYG 660 RNDLETLMAS ESAADWIRIS EMLLGKVPPD FKFAPKHKSN AYDSIENG*

Sequence ? help Back to Top

Protein Sequence Length: 709 aa Download sequence

MDDSLTEPPN SQTTQPLDLS PTSMDDSQTK PATTEVTHSA MDESEPEVTT TENTEPPSET  60
ETLNSNQPSP EELMAKGVAP VKKEFLRPPP TSRCVTSDDR DENGKSESKS KSSGVVVEKK  120
SKRQLKRERH EKLKSALNLC PAIARTGDIS SCNYGDKCRF SHDLEAYKTQ RPADLEGECP  180
FIYAQKPCPY GVTCRFYGTH KDVLNDNLDA LKEDSEVNML KKDVQKLLWK NKMKFPKSNV  240
ALKQLGVEGR GHTRVKDSEE EESIAPKVSN GSHCSEDKGC EKHDSANTQD PSAVLPEEPL  300
TDGILGVDDK RPLKKSKSGD DERDSSNDLN NGCSSVSGEG LVKDSTEDKP PSTNNCLPPE  360
TDASLKLLPR ERKLIDFRGK LYLAPLTTVG NLPFRRVCKD FGADVTCGEM AMCTNLLEVS  420
ADTVARAVEL IDQECSLDFI DINMGCPIDL VVNKGAGSAL LTKPLRMKNV IQAACASAER  480
PITVKVRTGY VEGRNRADSL ISQIYEWGAS AVTIHGRSRQ QRYSKAADWD YINTCVSKAP  540
GTFQVLGNGD VFSYTDWNKH FSDCPELSSC MIARGALVKP WLFTEIKEQR HWDISSGERL  600
DILRDYVRFG LEHWGSDSKG VETTRFFLLQ WLSYTFRYIP VGLLDVIPQK INWRPPSYYG  660
RNDLETLMAS ESAADWIRIS EMLLGKVPPD FKFAPKHKSN AYDSIENG*