PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62016842-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C3H
Protein Properties Length: 314aa    MW: 35561.6 Da    PI: 7.4803
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62016842-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.3e-12176201126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     y   +C+++ +tG+C yGd+CkF+H+
  AUR62016842-RA 176 YQPDICKDYKETGYCGYGDSCKFMHD 201
                     67789********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    
MSEENEKKTE QVCSFVKKPM GNKNMRKRPI VDAGDDDKGE SFVTHSAKRS ATGTSKRTVS  60
EESTKDEKNV LFQYESSKEI QVQNDSKATA TLETETDFSR DSRAIRERAL MKAAEALKGK  120
TNKTSGDEKV YKGMNSYTDH RAGFRREQTV AAEKAGGAHG PLRASAHIRV SARFDYQPDI  180
CKDYKETGYC GYGDSCKFMH DRGDYKSGWQ MEKEWDEAEK ARKRNLAMGC HDSDEEDVDH  240
DSEEDDDSLP FACFICREPF VDPVMTKCKH YFCEHCALKH HAKNKKCFVC NQPTLGIFNT  300
AHEIRKRAAA EKK*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-152C3H family protein