PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62016376-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | C3H | ||||||||
Protein Properties | Length: 141aa MW: 15332.1 Da PI: 9.4532 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.9 | 2.7e-11 | 23 | 48 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y+ +lCr+f+ tG C+yGd+C+F+H AUR62016376-RA 23 YRKALCRTFQSTGNCHYGDTCPFSHN 48 8899*********************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence |
MAERPSEAPV PANRGSVADK YKYRKALCRT FQSTGNCHYG DTCPFSHNTC KFNFKSRCPY 60 GSSSSAPVLA SESGNAQTAP KTLVNAEVQN PLKLTGSKHE MSPREVSTFK WKRSKKYVGI 120 YADWIDEESS VPGSASGSQQ * |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35430.1 | 8e-06 | C3H family protein |