PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62016044-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C3H
Protein Properties Length: 368aa    MW: 39726.2 Da    PI: 6.409
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62016044-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41e-074566426
                    ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                    + C+++ + G C+yGd CkF H+
  AUR62016044-RA 45 RVCNYWVQ-GKCSYGDGCKFLHS 66
                    78******.*************7 PP

Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    
RAYGGLGGGG PRNDGFSSRK NPSFNNTWGR PGGTSGGVPP KKMERVCNYW VQGKCSYGDG  60
CKFLHSWSIG GSFSLLTTLE GHQKVVTGIT LPSGDKLYTG SKDEHVRIWD CASGQCVSAV  120
HLGGEIGCMI SEGPWVFIGL PNMVKALNIE TVTDMSLSGP VGQVYSLMVG NDMLFAGIQD  180
GNILAWKFNP ATNCFEPAAS LTGHTSAVVT MFSGANRLYS GSMDNSIRVW NLETLQCIQI  240
LTEHTSVVMS VLCWEQFLLS ASLDNTIKVW TATPSGNLEV TYTHTEEHGI LTLCGMFDAE  300
AKPVLLCSTN DNFVHIYDLP SFMERGKIIS KQEIRAIQAG PSGLFFTGDG NGQVRVWNWL  360
AEPKTAM*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein