PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62016044-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | C3H | ||||||||
Protein Properties | Length: 368aa MW: 39726.2 Da PI: 6.409 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.4 | 1e-07 | 45 | 66 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+++ + G C+yGd CkF H+ AUR62016044-RA 45 RVCNYWVQ-GKCSYGDGCKFLHS 66 78******.*************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence |
RAYGGLGGGG PRNDGFSSRK NPSFNNTWGR PGGTSGGVPP KKMERVCNYW VQGKCSYGDG 60 CKFLHSWSIG GSFSLLTTLE GHQKVVTGIT LPSGDKLYTG SKDEHVRIWD CASGQCVSAV 120 HLGGEIGCMI SEGPWVFIGL PNMVKALNIE TVTDMSLSGP VGQVYSLMVG NDMLFAGIQD 180 GNILAWKFNP ATNCFEPAAS LTGHTSAVVT MFSGANRLYS GSMDNSIRVW NLETLQCIQI 240 LTEHTSVVMS VLCWEQFLLS ASLDNTIKVW TATPSGNLEV TYTHTEEHGI LTLCGMFDAE 300 AKPVLLCSTN DNFVHIYDLP SFMERGKIIS KQEIRAIQAG PSGLFFTGDG NGQVRVWNWL 360 AEPKTAM* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51980.1 | 0.0 | C3H family protein |