PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62016034-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | LBD | ||||||||
Protein Properties | Length: 160aa MW: 17967.4 Da PI: 6.7587 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.1 | 3.9e-40 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lr++C++dC+++pyfp+++pk+f+nvhk++Gasn+ ++l+++p + reda+++l yeA++r++dPvyG+v++i +lqq+l+ ++++l+ AUR62016034-RA 6 RCAACKYLRKRCPSDCIFSPYFPSNDPKRFENVHKIYGASNIARMLQRIPVHLREDAANCLHYEAHCRVQDPVYGCVKLIYQLQQELNVAQNQLV 100 6********************************************************************************************** PP DUF260 96 llkee 100 ++++e AUR62016034-RA 101 KAQAE 105 99987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence |
MASNSRCAAC KYLRKRCPSD CIFSPYFPSN DPKRFENVHK IYGASNIARM LQRIPVHLRE 60 DAANCLHYEA HCRVQDPVYG CVKLIYQLQQ ELNVAQNQLV KAQAEIALLL NVYGPPEDYI 120 SGPQTSEEDL SYSFENCYTQ PNIHGHLPLD PSSMGSGLM* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 2e-45 | LBD family protein |