PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62016015-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family HD-ZIP
Protein Properties Length: 757aa    MW: 83381.2 Da    PI: 6.3389
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62016015-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-1961116156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r++ +++t++q++eLe++F+++ +p++++r e  k+lgL+ rqVk+WFqNrR+++k
  AUR62016015-RA  61 RKRYHRHTPQQIQELENFFKNCAHPDEKQRLEVGKRLGLESRQVKFWFQNRRTQMK 116
                     789999***********************************************999 PP
2START160.51.2e-502674873204
                     HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
           START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                     a +a++el+++a+ ++p+W+k      e +n++e+++kf++  +     + ++a+r++   + ++ +lve+++  + qW  +++    ka+t+ev
  AUR62016015-RA 267 AMAAMDELLAMAQTDSPLWFKGLddgkELLNQEEYVKKFSSFTGmkpcgFITDASRETSSIFITSLELVETMMIPR-QWRDMFPcmvsKAATVEV 360
                     5689*******************9999999*********775559*********************9999988888.****************** PP

                     ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
           START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172
                     +  g      g+lq m+ael+++sp vp R   ++Ry++q+ +g w++vdvSvd  ++p+ s s+++ ++lpSg++++ ++ng+s vtw+eh+++
  AUR62016015-RA 361 LYHGaggtrdGELQMMSAELVFPSPFVPsRHEKILRYCKQHAEGMWAVVDVSVDMIRDPSYSGSSIKWRRLPSGCIVQNVANGYSLVTWIEHTEY 455
                     ***********************************************************99********************************** PP

                     -SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
           START 173 kgrlphwllrslvksglaegaktwvatlqrqc 204
                     +++++h+l+r+l++sg+a+g ++w atlqr +
  AUR62016015-RA 456 DENSIHQLYRPLLRSGVAFGSQRWIATLQRER 487
                     *****************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    
MGKMERLDEM GFYGDQYDPN NMIMENSGSD NYESLSVGDV PKLDPEPELE GPSQVKPKGR  60
RKRYHRHTPQ QIQELENFFK NCAHPDEKQR LEVGKRLGLE SRQVKFWFQN RRTQMKTQIE  120
RNENLVLKAE YDKLRVENIA MKDALRNPLC QACGGPTMLG DVSITNHHLR VENARLKDDL  180
ARVCAVAERF IGKPITDLVG PIGIPTSSSN LELSMGRGGL GGLMSSSSSL PMGLNLENGL  240
SSNSTMIVSM NGSVSTEYEK SIFMQAAMAA MDELLAMAQT DSPLWFKGLD DGKELLNQEE  300
YVKKFSSFTG MKPCGFITDA SRETSSIFIT SLELVETMMI PRQWRDMFPC MVSKAATVEV  360
LYHGAGGTRD GELQMMSAEL VFPSPFVPSR HEKILRYCKQ HAEGMWAVVD VSVDMIRDPS  420
YSGSSIKWRR LPSGCIVQNV ANGYSLVTWI EHTEYDENSI HQLYRPLLRS GVAFGSQRWI  480
ATLQRERDCA AIFMSARIVP NDTTGVITQE GRRSILKLMR RISNNFSSGL CASSACRWEK  540
LQVGVLGADV CVMSRVSVDE PGEPSGVVLS ASTSVWIPVP RQHIFEFLRD EKLRGKWDIL  600
ANGGPMEVVA RLSKSHDVNN CVSLLCPPVS AAPARESNML ILQESWTDRT SSFIVYAPVD  660
STSMETVLRG GDSDYLSLLP SGFAVADAPI HPNVLTLAND NGAGGSGGGG ASALTLGFQI  720
LVNSLPTAKL TVESINTVND LMSCTIQKIK NSLGAN*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0HD-ZIP family protein