PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62015455-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | C3H | ||||||||
Protein Properties | Length: 289aa MW: 33229.4 Da PI: 8.8505 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.9 | 2.7e-06 | 87 | 108 | 6 | 26 |
-SGGGGTS.--TTTTT-SS-SS CS zf-CCCH 6 CrffartG.tCkyGdrCkFaHg 26 C++++++ C++G+ C +aHg AUR62015455-RA 87 CPDYRASNgNCPRGELCEYAHG 108 788888777************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence |
MYRVDVENML REYSNAYNNR TRYPNPFADT DFEPDNFESD EFRMYSFKVK RCPLMRAHDW 60 TVCPYAHQGE RARRRDLKKV LYVAVSCPDY RASNGNCPRG ELCEYAHGVF EYWLHPTKYR 120 TRFCNAGNRC TRPICFFAHS LKQLRAEPMA HVPKWVRLAL RTQKLDLQAP PAEPSLSATN 180 AATHNSSTSG GREVGVIGRP RMSNTTPTPT SALWELQLPS SNINSRAPPT GRPQELKLEF 240 LETLRMLSIN DYYKVYNNNQ VVQNHNVDRE NVNSDGPRFD WVSDLLAG* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07500.1 | 3e-51 | C3H family protein |