PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62014852-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | C3H | ||||||||
Protein Properties | Length: 641aa MW: 70958.8 Da PI: 6.4085 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21 | 6e-07 | 179 | 198 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C +fa+ G+C G++C+F H AUR62014852-RA 179 ICEYFAK-GWCIKGSSCRFLH 198 6******.************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 641 aa Download sequence |
MAEQDDNQDV ETKGGEVCLR SGHTSDVKSE ASILCDTRAA EICCDRNSSP KLQNADESGT 60 PSIDVGRYKS SKLYKHIAGP LSNGSDAVEE KQEHVEQSIL VSASETHVSA PHAVSDQLGN 120 METADVKDSK LLSEEANHHS PSRQDMDHKD SRSWFPRVRS RSLSPGAECE DGSKRPAIIC 180 EYFAKGWCIK GSSCRFLHKR DHENATQVEG GVLLTKSELS PDKGSGDNVG KGIQRERGVG 240 SRQYEDTDTN ALLERKVSSS LFSTDFKNLP SCKDGPRQVE VEVDIYKENH SSDNFGSSVA 300 ESSSIPQQNF CSRFGSSMRE LGVSSGSDSI SRLVEESAAM RRRYSLDAQS SVPSYHFSSW 360 KNTSLLRSSP LYSGSNSGKY SDSSYTLGGL LSFKFKKAFT PYNWEPSVPF QSSYFKPPVN 420 RSSDVPYDPF RDSIEKSDIG RESVRLPSCC QTQDAKSISG QISPELPRRL EIESWDKNYS 480 GHDKVIPAVE AESAATSNSD AQNKSLTEEE NPMVPGSVKA ILKASRSVND GNSKIQSGEL 540 KLENGRQPVE LDEEESKIIR CFRTALIEFV KELMKPIWHE GRLSKDVYKV IVQKAEDKIL 600 STLKPNQVPN SSELIKQYLS FSRPKILKLI QAYVDKYGRF * |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 2e-30 | C3H family protein |