PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62014852-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C3H
Protein Properties Length: 641aa    MW: 70958.8 Da    PI: 6.4085
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62014852-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH216e-07179198525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     +C +fa+ G+C  G++C+F H
  AUR62014852-RA 179 ICEYFAK-GWCIKGSSCRFLH 198
                     6******.************* PP

Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    
MAEQDDNQDV ETKGGEVCLR SGHTSDVKSE ASILCDTRAA EICCDRNSSP KLQNADESGT  60
PSIDVGRYKS SKLYKHIAGP LSNGSDAVEE KQEHVEQSIL VSASETHVSA PHAVSDQLGN  120
METADVKDSK LLSEEANHHS PSRQDMDHKD SRSWFPRVRS RSLSPGAECE DGSKRPAIIC  180
EYFAKGWCIK GSSCRFLHKR DHENATQVEG GVLLTKSELS PDKGSGDNVG KGIQRERGVG  240
SRQYEDTDTN ALLERKVSSS LFSTDFKNLP SCKDGPRQVE VEVDIYKENH SSDNFGSSVA  300
ESSSIPQQNF CSRFGSSMRE LGVSSGSDSI SRLVEESAAM RRRYSLDAQS SVPSYHFSSW  360
KNTSLLRSSP LYSGSNSGKY SDSSYTLGGL LSFKFKKAFT PYNWEPSVPF QSSYFKPPVN  420
RSSDVPYDPF RDSIEKSDIG RESVRLPSCC QTQDAKSISG QISPELPRRL EIESWDKNYS  480
GHDKVIPAVE AESAATSNSD AQNKSLTEEE NPMVPGSVKA ILKASRSVND GNSKIQSGEL  540
KLENGRQPVE LDEEESKIIR CFRTALIEFV KELMKPIWHE GRLSKDVYKV IVQKAEDKIL  600
STLKPNQVPN SSELIKQYLS FSRPKILKLI QAYVDKYGRF *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-30C3H family protein