PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62014100-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 347aa MW: 38245.4 Da PI: 7.0711

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62014100-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	43.8	4.3e-14	269	294	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++t tC+yGd C+FaHg AUR62014100-RA 269 FKTELCNKWQETKTCPYGDHCQFAHG 294 79***********************8 PP
2	zf-CCCH	17.9	5.6e-06	307	331	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ykte Cr +++ C+yG rC+F H AUR62014100-RA 307 YKTEVCRMVLAGDPCPYGHRCHFRH 331 9********55********88 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MQQDTSSSAN MMSSAGDIFT PPPYSIFFHS ATSPTSFNSS PVNSDGNSGR NTDNISAMAL 60 RSFPRIVADH KELLSRHSLC LAQLCKTFNE AETLRQENTN LRLENLDLSN QLNLLIQDNL 120 QSRYLAMSFS DYPEQLGSSS LSAAAEKLGG GSGSSGGSFQ KERVSGDWDE GFCSNNQNRS 180 TVNEKSQEED HKEENARVAL PKSISVRSNG FVKMNQIAAA SAQNNSTPTR SVTPLQSSGN 240 VSGPQKVYVR GGSNKNGPIE LEVYNQGMFK TELCNKWQET KTCPYGDHCQ FAHGIEELRP 300 VIRHPRYKTE VCRMVLAGDP CPYGHRCHFR HALTDEEKLM HSPRLN*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MQQDTSSSAN MMSSAGDIFT PPPYSIFFHS ATSPTSFNSS PVNSDGNSGR NTDNISAMAL  60
RSFPRIVADH KELLSRHSLC LAQLCKTFNE AETLRQENTN LRLENLDLSN QLNLLIQDNL  120
QSRYLAMSFS DYPEQLGSSS LSAAAEKLGG GSGSSGGSFQ KERVSGDWDE GFCSNNQNRS  180
TVNEKSQEED HKEENARVAL PKSISVRSNG FVKMNQIAAA SAQNNSTPTR SVTPLQSSGN  240
VSGPQKVYVR GGSNKNGPIE LEVYNQGMFK TELCNKWQET KTCPYGDHCQ FAHGIEELRP  300
VIRHPRYKTE VCRMVLAGDP CPYGHRCHFR HALTDEEKLM HSPRLN*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	1e-67	C3H family protein