PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62013688-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C2H2
Protein Properties Length: 348aa    MW: 39031.2 Da    PI: 7.8717
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62013688-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012218240123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC  C+k F++   L  H  +H
  AUR62013688-RA 218 YKCDTCNKGFRSYQALGGHRASH 240
                     9***********99999998887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    
MERHRCKLCF RKFANGRALG GHMRSHMLNH SVASKPDSPA PPPPQLRMRT PSWSETESPP  60
PSSVSHFLSS SDSEHEDEVE FATHDNDELI VAEPTGSSSL VTSQDRESET ESFRKKNHPT  120
RKRRSKRILQ KPASSTSFDY HYFDHQQRQH YVRGCRKSSG SSAVDVEADL PVSSITEVTS  180
EEDLAFCLMM MSRDKWNSSV GKRTTATTKN NNNKKMKYKC DTCNKGFRSY QALGGHRASH  240
KKIRVNESEQ RADNTNEDEN RVDDGSDSMM IKKVHECPIC LRVFASGQAL GGHKRSHVLV  300
SNNGVDHNNL LDNSKITKIT TRDSLIDLNL PASVEDEDDS AVSDVHF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120125TRKRRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-38C2H2 family protein