PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62013624-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | LBD | ||||||||
Protein Properties | Length: 115aa MW: 12312.2 Da PI: 8.6473 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 98.9 | 4.9e-31 | 35 | 113 | 10 | 87 |
DUF260 10 rkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 kC+ +C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ AUR62013624-RA 35 GKCVVGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQV 113 59*************9989**********************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence |
MPLTDEFSPF SFGWGIKVRP YGRSSGVGSS GREGGKCVVG CIFAPYFDSE QGAAHFAAVH 60 KVFGASNVSK LLLHIPVHKR LDAVVTICYE AQARLRDPVY GCVAHIFALQ QQVG* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 2e-48 | LBD family protein |