PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62012275-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

LBD

Protein Properties

Length: 397aa MW: 41843.1 Da PI: 8.3854

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62012275-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.8	1.1e-39	230	329	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+l+r+C+++C++ap+f a++pkkfa vhk+FGasnv+k+l+++pee+red+++sl yeAear+rdPvyG++g i lq+++ ql+++la AUR62012275-RA 230 SCAACKLLKRRCSPSCIFAPHFRADEPKKFAKVHKVFGASNVSKILNEVPEEHREDTVNSLSYEAEARLRDPVYGCIGAIALLQRRMIQLQHDLA 324 6********************************************************************************************** PP DUF260 96 llkee 100 l++++ AUR62012275-RA 325 LARAR 329 99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MELKKDHIVA LIVSACILFG VLLLLCLCCC CMGRKKQQQT SKSSDVGVGR PTATPTSKGV 60 RDGNMAILGA ATDVLAARDG GRSMAPADSN IGTEDDDCSA NGDVEIGKGK RTNSVKDGDM 120 VILAGDGAVV EAIANIGCLI AVILLLILII RCGKKKEVKN LPSQRSVTAA NGDVEIGGGK 180 GISRSVNNGN MVILAGDGGR VLAPAAVVAS TSKPKPTMKK GYTEPRSSSS CAACKLLKRR 240 CSPSCIFAPH FRADEPKKFA KVHKVFGASN VSKILNEVPE EHREDTVNSL SYEAEARLRD 300 PVYGCIGAIA LLQRRMIQLQ HDLALARARL AQYKANNVTA SSNTDNGFFG LGDHNVSIIH 360 MNLCSEGLIS SDQFSQNDSG AYNSTDFGQV PDLLPL*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MELKKDHIVA LIVSACILFG VLLLLCLCCC CMGRKKQQQT SKSSDVGVGR PTATPTSKGV  60
RDGNMAILGA ATDVLAARDG GRSMAPADSN IGTEDDDCSA NGDVEIGKGK RTNSVKDGDM  120
VILAGDGAVV EAIANIGCLI AVILLLILII RCGKKKEVKN LPSQRSVTAA NGDVEIGGGK  180
GISRSVNNGN MVILAGDGGR VLAPAAVVAS TSKPKPTMKK GYTEPRSSSS CAACKLLKRR  240
CSPSCIFAPH FRADEPKKFA KVHKVFGASN VSKILNEVPE EHREDTVNSL SYEAEARLRD  300
PVYGCIGAIA LLQRRMIQLQ HDLALARARL AQYKANNVTA SSNTDNGFFG LGDHNVSIIH  360
MNLCSEGLIS SDQFSQNDSG AYNSTDFGQV PDLLPL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	4e-59	LBD family protein