PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62012259-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C3H
Protein Properties Length: 522aa    MW: 56263.1 Da    PI: 8.0764
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62012259-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.4e-08183203526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f + G Ck G+ C FaHg
  AUR62012259-RA 183 PCPEFKK-GSCKKGEDCEFAHG 203
                     8******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    
MGMDIAQEQV CNNTSTLLEY AASDDVTSFK LAVESGGVPI DEVGVWYTRR IGSSKMAYEE  60
RTPLMIAAQF GSENILDFVL QFGGESVDVN RVSGSDRVTA LHCAVAGGSH NSAYVVHRLI  120
SASANTNIVD ANVYGSDDFR MYCFKIKPCS RAYTHDWTEC PFAHPGENAR RRDPKKYQYT  180
CVPCPEFKKG SCKKGEDCEF AHGVFESWLH PAQYRTRLCK DEIGCARKVC FFAHKREELR  240
PVYASTGSAI PDVSVSSSPN GGFSCTSTPP MSPSFAPLSP GNGASAGAGG MYQGKSGFGV  300
TPPNLQLPGS RLRPSPRWNN NNMGRANDMV QATNLESAFA SINVARKMSP PSVLDSPLNS  360
PRKLSPPRAL DSPKSMAAAM LNSRAAAFVK RSQSFIDRTA PGSPMGGNMS SPMSTPMSNW  420
GSPNGTLDWG IHGEELNKLR KSNSFGFRGA NNNANATRTS PPGFNEPDVS WVNSLVKDEA  480
GAGFLGARSQ SYVRSGAGNG AQGQEMCLPW EQMYIEEQLV N*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-108C3H family protein