PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62012252-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

NF-X1

Protein Properties

Length: 870aa MW: 96779 Da PI: 8.3493

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62012252-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	16.1	2.5e-05	190	208	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG H C lCH+GpCp+Cp+ AUR62012252-RA 190 CG-HFCLLLCHPGPCPSCPK 208 .*************96 PP
2	zf-NF-X1	21	7.4e-07	242	261	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H+C+++CH +CppC++ AUR62012252-RA 242 CGIHRCSEICHNDECPPCRE 261 ******************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 870 aa Download sequence
MSSTKNPPQS HSSDTSDYDS DTAPNSSAHQ LRHVDLSNTI FKAYLEINGQ DSSSSPQSLD 60 LTKIQSFLNS SSSGALSCLI CLERIKSTDP TWSCNGFCFS VFHLQCIQNW AQQSTALAAS 120 RALTRLPISA QTAADTSVWN CPKCRFEYSK SLIPKNYYCF CGKLENPPHD PWVLPHSCGE 180 ICGRPLKNNC GHFCLLLCHP GPCPSCPKLV KSKCFCGGVQ DVRRCGFKEF SCNKQCNKVL 240 DCGIHRCSEI CHNDECPPCR EKGVYRCQCG KVKEERECCD RDFRCDNPCG QGLDCGKHVC 300 ERGCHEGVCG HCPLKGRRTC PCGRRVYEGI PCDVEVALCG ATCDKKLSCG KHTCHERCHR 360 GSCVETCRIM ITKSCRCGSV KKQIWHVKGS VRENVIVGAM HVGVVAAMEI VHLVQRFVAG 420 GSVAEITNAL LHVIGPCAPC PLMVTISCAC GETRFEVPCG TETEQKPPRC RKTCRIAPLC 480 RHKSICKPHK CHYGNCPPCG LPCGEEYSCG HACKLRCHGP RPPPNPEFTL KPKKKKHNYQ 540 SEPTAGTSCP PCPELVWRSC LGQHFAAERM MVCSNKAQFS CDNLCGNPLA CGNHYCTKTC 600 HVLQNLSSSS DQHTRGVPCE DCTLPCQKEM TPACSHPCPQ PCHPEECPPC KVLLKRACHC 660 GAMVHVFECI YYNTLSEKEQ LSARSCGGPC HRKLPYCTHL CPETCHPGPC PSPEKCCKKV 720 TVRCGCHNLK KEWLCRDVQT SYRNSGRDLK DIPKTQYGYG LLSCDSSCKS KAQAAESELL 780 QRKAKAPEKE IENETNAPKR KKRRGRVQEM KQVSKFQKLI TWLQRFVMFI IVLVALVAVA 840 YYGYKGLLSL NDWMNKVEEH REKRRYRRI*

Sequence ? help Back to Top

Protein Sequence Length: 870 aa Download sequence

MSSTKNPPQS HSSDTSDYDS DTAPNSSAHQ LRHVDLSNTI FKAYLEINGQ DSSSSPQSLD  60
LTKIQSFLNS SSSGALSCLI CLERIKSTDP TWSCNGFCFS VFHLQCIQNW AQQSTALAAS  120
RALTRLPISA QTAADTSVWN CPKCRFEYSK SLIPKNYYCF CGKLENPPHD PWVLPHSCGE  180
ICGRPLKNNC GHFCLLLCHP GPCPSCPKLV KSKCFCGGVQ DVRRCGFKEF SCNKQCNKVL  240
DCGIHRCSEI CHNDECPPCR EKGVYRCQCG KVKEERECCD RDFRCDNPCG QGLDCGKHVC  300
ERGCHEGVCG HCPLKGRRTC PCGRRVYEGI PCDVEVALCG ATCDKKLSCG KHTCHERCHR  360
GSCVETCRIM ITKSCRCGSV KKQIWHVKGS VRENVIVGAM HVGVVAAMEI VHLVQRFVAG  420
GSVAEITNAL LHVIGPCAPC PLMVTISCAC GETRFEVPCG TETEQKPPRC RKTCRIAPLC  480
RHKSICKPHK CHYGNCPPCG LPCGEEYSCG HACKLRCHGP RPPPNPEFTL KPKKKKHNYQ  540
SEPTAGTSCP PCPELVWRSC LGQHFAAERM MVCSNKAQFS CDNLCGNPLA CGNHYCTKTC  600
HVLQNLSSSS DQHTRGVPCE DCTLPCQKEM TPACSHPCPQ PCHPEECPPC KVLLKRACHC  660
GAMVHVFECI YYNTLSEKEQ LSARSCGGPC HRKLPYCTHL CPETCHPGPC PSPEKCCKKV  720
TVRCGCHNLK KEWLCRDVQT SYRNSGRDLK DIPKTQYGYG LLSCDSSCKS KAQAAESELL  780
QRKAKAPEKE IENETNAPKR KKRRGRVQEM KQVSKFQKLI TWLQRFVMFI IVLVALVAVA  840
YYGYKGLLSL NDWMNKVEEH REKRRYRRI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	798	804	PKRKKRR
2	800	806	RKKRRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein