PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62012130-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family LBD
Protein Properties Length: 236aa    MW: 25891.2 Da    PI: 4.4439
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62012130-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260114.85.5e-3671071100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+ +Cv+apyf  ++  ++fa+vhk+FGasnv++ll +lpe+ r +a+ ++ +eA ar+rdPvyG+v+ i++lqq++++l++e+
  AUR62012130-RA   7 SCGACKFLRRKCTIECVFAPYFSYDEaVAHFAAVHKVFGASNVSRLLLHLPEHFRGEAALTISFEAIARMRDPVYGCVAYIHALQQEVASLQEEI 101
                     6***********************9956******************************************************************* PP

          DUF260  95 allkee 100
                     ++++++
  AUR62012130-RA 102 EVIGNQ 107
                     998877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MTGVSTSCGA CKFLRRKCTI ECVFAPYFSY DEAVAHFAAV HKVFGASNVS RLLLHLPEHF  60
RGEAALTISF EAIARMRDPV YGCVAYIHAL QQEVASLQEE IEVIGNQMVN TMSIGITSDC  120
EGSQATNNNL LTYDTSSPLL LCSQEYEIIN NLPEEWNTTS TNYQVEPVIH ADNNGSSCST  180
QMMFNNHMIN LLPGQNNLFG NGYGPQECLL EGLINLETFD NSSLFGCLSH TPSIQ*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.19e-44LBD family protein