PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62012061-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

SBP

Protein Properties

Length: 374aa MW: 39563.3 Da PI: 8.2269

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62012061-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	138.4	2e-43	72	147	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC++dls+ak+y++rhkvC +hsk+p v+v+g+eqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ AUR62012061-RA 72 RCQVEGCNTDLSDAKTYYSRHKVCGMHSKSPIVIVAGIEQRFCQQCSRFHRLPEFDQGKRSCRRRLAGHNERRRKP 147 6*************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MGSNYMNVEG SSTSSSGLSD SINGLKFGQK IYFEDVGSGG GGSGKSSGAG GGGCGPVKKG 60 GKAVLQSGQP PRCQVEGCNT DLSDAKTYYS RHKVCGMHSK SPIVIVAGIE QRFCQQCSRF 120 HRLPEFDQGK RSCRRRLAGH NERRRKPPPG SLLSSRLGRL SSSFFGDNTS KNGGFLLDFS 180 SYSRQSEKDL WPGSETSEQV SGSQSRSIVW PGHSEDHPSK MYLHGSASES SYSFPSGECI 240 TGVSSDSSCA LSLLSNQSWG SRNSSSGTAL GNSMNVDGTP VSQCNAAHGV TVAHFPNSSS 300 SWGFKGNNDA SCGLHGVPSG HLGLGQISQP HYNGQFHGDL LMDHVQAGGQ QYMDVDHSRA 360 YNSNNTNHVD WSL*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MGSNYMNVEG SSTSSSGLSD SINGLKFGQK IYFEDVGSGG GGSGKSSGAG GGGCGPVKKG  60
GKAVLQSGQP PRCQVEGCNT DLSDAKTYYS RHKVCGMHSK SPIVIVAGIE QRFCQQCSRF  120
HRLPEFDQGK RSCRRRLAGH NERRRKPPPG SLLSSRLGRL SSSFFGDNTS KNGGFLLDFS  180
SYSRQSEKDL WPGSETSEQV SGSQSRSIVW PGHSEDHPSK MYLHGSASES SYSFPSGECI  240
TGVSSDSSCA LSLLSNQSWG SRNSSSGTAL GNSMNVDGTP VSQCNAAHGV TVAHFPNSSS  300
SWGFKGNNDA SCGLHGVPSG HLGLGQISQP HYNGQFHGDL LMDHVQAGGQ QYMDVDHSRA  360
YNSNNTNHVD WSL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	1e-41	SBP family protein