PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AUR62012040-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 248aa MW: 26287.6 Da PI: 9.7409 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.6 | 3.7e-07 | 34 | 58 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k ++C f+ t C++G++C+F H AUR62012040-RA 34 KSKPCTKFFSTSGCPFGENCHFLHH 58 7789********************6 PP | |||||||
2 | zf-CCCH | 25.6 | 2.1e-08 | 97 | 120 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 kt+lC+ f CkyGd+C+FaH AUR62012040-RA 97 KTRLCNKFNSAEGCKYGDKCHFAH 120 8*********************** PP | |||||||
3 | zf-CCCH | 33.6 | 6.6e-11 | 214 | 238 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y+t+lC +f + G C +GdrC+FaHg AUR62012040-RA 214 YRTKLCENFTK-GSCTFGDRCHFAHG 238 89*********.*************8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence |
MDGRKRGRNN DAGAVHSNGG FKKHKQETDG IGSKSKPCTK FFSTSGCPFG ENCHFLHHVS 60 GGYNAVAQLM NLPPMSRNAP PPPPPPQSHN GSAPAAKTRL CNKFNSAEGC KYGDKCHFAH 120 ATAKISVDAS LAGAIIGKSG VNSKQICRQT GVKLSIRDHD SDSNKRNIEL EGTFDQIKMA 180 SEMVHDLVAS VSANAPFNKA PVGPAPHGPT STNYRTKLCE NFTKGSCTFG DRCHFAHGAA 240 ELRKSGV* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06770.1 | 2e-85 | C3H family protein |