PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62011972-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 426aa MW: 46262.9 Da PI: 8.4953

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62011972-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.5e-05	30	52	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H AUR62011972-RA 30 FICEICNKGFQRDQNLQLHRRGH 52 89*******************88 PP
2	zf-C2H2	14.1	0.00013	107	129	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C+k + +s+ k H +t+ AUR62011972-RA 107 YKCEKCSKIYAVQSDWKAHSKTC 129 9******************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MPNGFDLIYA DPDAEVIALS PKTLLATNRF ICEICNKGFQ RDQNLQLHRR GHNLPWKLKQ 60 RSKTEVIRKK AYVCPEPSCV HHHPSRALGD LTGIKKHFCR KHGEKKYKCE KCSKIYAVQS 120 DWKAHSKTCG TREYRCDCGT LFSRKDSFIT HRAFCDALAE ESARLSTNPF ANPILPPPQP 180 PPFSTQNPNS SLFPFITSSS MSHSSSPWDP NPQNPNPNPL IHIKTENPHF STPPPFFQPP 240 SIFTNQSKSL LTSLPFTSSD TSAMSSAHFL SATALLQKAT TVGAVGNNTM SAMMNGFDEL 300 GAMSRHMGPP TTDEMSSVLP PHSSSSTNTN STNAATTTPT DHPNNADHFT AMLNTWRKNN 360 DGMTRDFLGL TAGDYNTNAG GGGGFNGDEV VGNMLKFTVD GFGFVSGAEP PTTAAAAAAP 420 GSRWG*

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MPNGFDLIYA DPDAEVIALS PKTLLATNRF ICEICNKGFQ RDQNLQLHRR GHNLPWKLKQ  60
RSKTEVIRKK AYVCPEPSCV HHHPSRALGD LTGIKKHFCR KHGEKKYKCE KCSKIYAVQS  120
DWKAHSKTCG TREYRCDCGT LFSRKDSFIT HRAFCDALAE ESARLSTNPF ANPILPPPQP  180
PPFSTQNPNS SLFPFITSSS MSHSSSPWDP NPQNPNPNPL IHIKTENPHF STPPPFFQPP  240
SIFTNQSKSL LTSLPFTSSD TSAMSSAHFL SATALLQKAT TVGAVGNNTM SAMMNGFDEL  300
GAMSRHMGPP TTDEMSSVLP PHSSSSTNTN STNAATTTPT DHPNNADHFT AMLNTWRKNN  360
DGMTRDFLGL TAGDYNTNAG GGGGFNGDEV VGNMLKFTVD GFGFVSGAEP PTTAAAAAAP  420
GSRWG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	57	70	KLKQRSKTEVIRKK
2	59	72	KLKQRSKTEVIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-102	C2H2 family protein