PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62011897-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family LBD
Protein Properties Length: 236aa    MW: 25752.4 Da    PI: 6.4219
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62011897-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.21.5e-397106199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasnv+kll++lp ++r++a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+l
  AUR62011897-RA   7 PCGACKFLRRKCVRGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLAHLPASDRSEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQL 101
                     7*************************89******************************************************************* PP

          DUF260  95 allke 99 
                     a+lk+
  AUR62011897-RA 102 AALKQ 106
                     99886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MTGSSSPCGA CKFLRRKCVR GCVFAPYFCH EQGATHFAAI HKVFGASNVS KLLAHLPASD  60
RSEAAITISY EAQARLQDPI YGCVSHIFAL QQQVVNLQAQ LAALKQLQAA QGLLNGNNST  120
QNPSERSSSN YPQDVHSWLQ SEYPQMVPPF DPNHLNCSAE SSAIYGSNNQ GGYNNNHNSM  180
VLQDDQDASF ASYEGSSSHH SASMASLEYE NKSKWPYQDA DDLHSMAFGY TQYSL*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.17e-54LBD family protein