PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62011091-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C3H
Protein Properties Length: 519aa    MW: 59178.5 Da    PI: 6.5123
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62011091-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.5e-07100122326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     t++C +++  G+C+ GdrC+F H 
  AUR62011091-RA 100 TVPCYYYYN-GFCNKGDRCPFLHE 122
                     89*******.*************5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    
MEDELLKRNT DCVYFLASPF TCKKGVECEY RHSEMARLNP RDCWYWMSGN CLNPTCAFRH  60
PKQGSLFSVD VQPLESHNVA PTDAAPPLLN QSSVSATKTT VPCYYYYNGF CNKGDRCPFL  120
HEPGGALGLN TKMAIAVDAA VHPLDSKTSG RAESELKPAE KYLIPSEMTT TSASRLQNEQ  180
KQQPQHYDTA IIPELSTVSK QTYIPEREGT VAVKTGTLQH VERSNKSEFE PSLESDQSSE  240
DQIDGNIVRD EWCESSPGFD VLVEGETEDM VYEDDPEDMR SIDGNDGGNE HLFLPHGYAH  300
QAEYDEKEYF DNGLYEPSEY INDELRTDLL EFPSRHTQDR GARRTVARKR NILCVETPVG  360
GRHDVDLRDY LRKQRMVDGY LETHDLRHVR DGRQEKLQRH ASNQRVHGRL ASKVERPGVR  420
LSRRRNSAVD AEQRGRSRNS QHNGNRQYNG MRSRQSLSER RTYSKRERYA QESTVYESKN  480
HDAVKVDRNE GHLHKNGSAD FEGPKPLSEI LKDKKKMA*