PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62011086-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 322aa MW: 36062.3 Da PI: 7.1555

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62011086-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30	9.1e-10	80	105	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC f+ G+C+ G++C+FaHg+ AUR62011086-RA 80 FKTRLCAKFRM-GQCRNGENCNFAHGE 105 69*******.***********96 PP
2	zf-CCCH	29.3	1.5e-09	143	166	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k++lC+ f+ + +C+yGdrC+F H AUR62011086-RA 143 KMKLCKKFYNGEECPYGDRCNFLH 166 789*****66********** PP
3	zf-CCCH	37	5.6e-12	211	237	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 y+t++C f tG+C++Gd+C+FaHg+ AUR62011086-RA 211 YDTKRCTKFETTGQCPFGDNCHFAHGQ 237 89***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence
MSFSDSFSSF VPFSNGLDSM GFWPQFNGSN EQPEVNSEFD HDLPPLKRSK SSSDNLPSNL 60 THRTPQMNPP VNQPTGKIFF KTRLCAKFRM GQCRNGENCN FAHGEDDLRK PPPNWQELVG 120 GRTEDRGNSG SDNWEDDDRI IHKMKLCKKF YNGEECPYGD RCNFLHKEPA KFREPAPVRF 180 RENSRESSAI SIGTTGPPMV QQQQSRVPDQ YDTKRCTKFE TTGQCPFGDN CHFAHGQSEL 240 LLPGGRPADA EPVTMNSAPL KPVSAPINDP TPTKIDIGVP SGHEGQGKKC LFKWKGTKKI 300 NRIYGDWIDD LPLNLPNQVE S*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	2e-76	C3H family protein