PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62010423-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 542aa MW: 58685.5 Da PI: 8.7655

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62010423-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.3	4.3e-06	522	541	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 Cr f+++G+C+ G++C F+H+ AUR62010423-RA 522 CR-FHENGHCRKGSSCDFMHS 541 88.9999*************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MVMHVQELQL DFYVEFCLFK RECVEKLQLL KTPEERQRRL NEVPEVHADP KMDPSCESDD 60 EIEHDKRQAS NMRPRESGHF RRGRDHYSSR SANARPPNKS WEPGRIFPRS EHTWNNGVDN 120 GTPKSNSWEK PRSTPDSLMS NRAEHSGIRS DLSVAAASEP TLPLSSAAVQ TDGQIDEKEK 180 MWHYRDPTGK KDPRSVGSNL DVSSNIRNTL PITDASKLSG SRYDSSNLPS PTPIRSPAAW 240 SGMQTSSSFK STNQFRGNER LPSPTPTSPA SNPSGVDKAK FSQQSKGEVA GNKPENVAAP 300 MGTVQHAPVQ FVSNKGFSNI VQPGTEQNPP VYTHNWGAGY VARPEMVNAN VSTSNNQNAL 360 PAQVSYSQWT GAAVNNQPPP YAAGYPPGQG IIAANFPAMP ANNAWRPTQA NMPWGAQQQQ 420 PVNQNVGWSG QPAVAMGQQL TSPSPGAPAM VAAQPTVGWT GTGPNPSAGN SNMVWVAAPG 480 NTGAWGGDQN RNDGGARDNR NDGGAQWNRQ SSFGSGGQRG VCRFHENGHC RKGSSCDFMH 540 S*

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MVMHVQELQL DFYVEFCLFK RECVEKLQLL KTPEERQRRL NEVPEVHADP KMDPSCESDD  60
EIEHDKRQAS NMRPRESGHF RRGRDHYSSR SANARPPNKS WEPGRIFPRS EHTWNNGVDN  120
GTPKSNSWEK PRSTPDSLMS NRAEHSGIRS DLSVAAASEP TLPLSSAAVQ TDGQIDEKEK  180
MWHYRDPTGK KDPRSVGSNL DVSSNIRNTL PITDASKLSG SRYDSSNLPS PTPIRSPAAW  240
SGMQTSSSFK STNQFRGNER LPSPTPTSPA SNPSGVDKAK FSQQSKGEVA GNKPENVAAP  300
MGTVQHAPVQ FVSNKGFSNI VQPGTEQNPP VYTHNWGAGY VARPEMVNAN VSTSNNQNAL  360
PAQVSYSQWT GAAVNNQPPP YAAGYPPGQG IIAANFPAMP ANNAWRPTQA NMPWGAQQQQ  420
PVNQNVGWSG QPAVAMGQQL TSPSPGAPAM VAAQPTVGWT GTGPNPSAGN SNMVWVAAPG  480
NTGAWGGDQN RNDGGARDNR NDGGAQWNRQ SSFGSGGQRG VCRFHENGHC RKGSSCDFMH  540
S*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	7e-24	C3H family protein