PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62009883-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

AP2

Protein Properties

Length: 561aa MW: 62454 Da PI: 7.1535

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62009883-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	36.3	1.4e-11	258	314	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ ++++gr++A+++d + ++ ++ k + g ++ +e+Aa+a++ a++k++g AUR62009883-RA 258 SQYRGVTKHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 314 78*****************433.44555535555.779999************98 PP
2	AP2	46.2	1.1e-14	359	408	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g AUR62009883-RA 359 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAQAYDIAAIKFRG 408 9*************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence
MSNWLGFSLT PHPHLHHHIV DDNGSHNSHH QLQEVDKRNS TPSSPPHRNN NVTSFMPLRS 60 DGSLFATALN DGLHDLPFTT SHPQLQEWKY ENDEQPKLED FMGCCYSTSQ DQENKMVINV 120 NALPQDQFST NNNSLSIQAC PYPPAPRGGV CDENRGELLS GAQPLQCHYS SSPFDGAAIS 180 QFKSWLRQTP PTVEHTTTTH FSGIDNGVQP QPLSLSVSPM VGLEEVTDVK KRGQAKLVNG 240 GRELVPRKSL DTFGHRTSQY RGVTKHRWTG RYEAHLWDNS CRKEGQTRKG RQGGYDKEEK 300 AARAYDLAAL KYWGPTTHIN FPLTDYEKEL EDMKNMNRQE FVAHLRRQSS GFSRGASMYR 360 GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAQAYD IAAIKFRGTS AVTNFDISRY 420 DVKRICSSST LLGADQAKRP SPNKDSSSPP PAISLEDYNA SSQPLVITNG NENASNNLPS 480 IMWKPQGDDQ TRSQDCPDNT MSLVLPSSNI NESHSSPMYL SPQGQKYEEG AISNDGGGDR 540 LSKHNLGAVP QIPIFALWNE *

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence

MSNWLGFSLT PHPHLHHHIV DDNGSHNSHH QLQEVDKRNS TPSSPPHRNN NVTSFMPLRS  60
DGSLFATALN DGLHDLPFTT SHPQLQEWKY ENDEQPKLED FMGCCYSTSQ DQENKMVINV  120
NALPQDQFST NNNSLSIQAC PYPPAPRGGV CDENRGELLS GAQPLQCHYS SSPFDGAAIS  180
QFKSWLRQTP PTVEHTTTTH FSGIDNGVQP QPLSLSVSPM VGLEEVTDVK KRGQAKLVNG  240
GRELVPRKSL DTFGHRTSQY RGVTKHRWTG RYEAHLWDNS CRKEGQTRKG RQGGYDKEEK  300
AARAYDLAAL KYWGPTTHIN FPLTDYEKEL EDMKNMNRQE FVAHLRRQSS GFSRGASMYR  360
GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAQAYD IAAIKFRGTS AVTNFDISRY  420
DVKRICSSST LLGADQAKRP SPNKDSSSPP PAISLEDYNA SSQPLVITNG NENASNNLPS  480
IMWKPQGDDQ TRSQDCPDNT MSLVLPSSNI NESHSSPMYL SPQGQKYEEG AISNDGGGDR  540
LSKHNLGAVP QIPIFALWNE *

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	1e-124	AP2 family protein